Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SEMA3DO95025 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SEMA3DO95025 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC17.49■□□□□ 0.39
SEMA3DO95025 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
SEMA3DO95025 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SEMA3DO95025 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SEMA3DO95025 Telomerase-vert.1-201ENST00000363312 438 ntBASIC17.49■□□□□ 0.39
SEMA3DO95025 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC17.49■□□□□ 0.39
SEMA3DO95025 SLC25A3P1-201ENST00000443844 931 ntBASIC17.49■□□□□ 0.39
SEMA3DO95025 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC17.49■□□□□ 0.39
SEMA3DO95025 RPS20-210ENST00000523936 899 ntTSL 2 BASIC17.49■□□□□ 0.39
SEMA3DO95025 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC17.49■□□□□ 0.39
SEMA3DO95025 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC17.49■□□□□ 0.39
SEMA3DO95025 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC17.49■□□□□ 0.39
SEMA3DO95025 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC17.49■□□□□ 0.39
SEMA3DO95025 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
SEMA3DO95025 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
SEMA3DO95025 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SEMA3DO95025 AL138966.2-201ENST00000621997 464 ntBASIC17.49■□□□□ 0.39
SEMA3DO95025 AC092865.7-201ENST00000641832 219 ntBASIC17.49■□□□□ 0.39
SEMA3DO95025 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.49■□□□□ 0.39
SEMA3DO95025 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SEMA3DO95025 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC17.49■□□□□ 0.39
SEMA3DO95025 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SEMA3DO95025 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SEMA3DO95025 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
SEMA3DO95025 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
SEMA3DO95025 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SEMA3DO95025 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.49■□□□□ 0.39
SEMA3DO95025 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.49■□□□□ 0.39
SEMA3DO95025 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
SEMA3DO95025 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC17.49■□□□□ 0.39
SEMA3DO95025 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SEMA3DO95025 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SEMA3DO95025 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC17.48■□□□□ 0.39
SEMA3DO95025 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC17.48■□□□□ 0.39
SEMA3DO95025 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SEMA3DO95025 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
SEMA3DO95025 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SEMA3DO95025 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC17.48■□□□□ 0.39
SEMA3DO95025 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SEMA3DO95025 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SEMA3DO95025 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SEMA3DO95025 AC018470.1-201ENST00000624790 3129 ntBASIC17.48■□□□□ 0.39
SEMA3DO95025 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SEMA3DO95025 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
SEMA3DO95025 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC17.48■□□□□ 0.39
SEMA3DO95025 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC17.48■□□□□ 0.39
SEMA3DO95025 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC17.48■□□□□ 0.39
SEMA3DO95025 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC17.48■□□□□ 0.39
SEMA3DO95025 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC17.48■□□□□ 0.39
SEMA3DO95025 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SEMA3DO95025 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SEMA3DO95025 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC17.48■□□□□ 0.39
SEMA3DO95025 AC024243.1-201ENST00000609234 778 ntBASIC17.48■□□□□ 0.39
SEMA3DO95025 AC012306.2-201ENST00000609350 630 ntBASIC17.48■□□□□ 0.39
SEMA3DO95025 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC17.48■□□□□ 0.39
SEMA3DO95025 AC141257.4-201ENST00000634557 245 ntBASIC17.48■□□□□ 0.39
SEMA3DO95025 AC136944.6-201ENST00000634818 245 ntBASIC17.48■□□□□ 0.39
SEMA3DO95025 AC097493.4-201ENST00000641197 219 ntBASIC17.48■□□□□ 0.39
SEMA3DO95025 AL133373.2-201ENST00000623187 2828 ntBASIC17.48■□□□□ 0.39
SEMA3DO95025 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC17.48■□□□□ 0.39
SEMA3DO95025 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
SEMA3DO95025 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC17.48■□□□□ 0.39
SEMA3DO95025 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC17.48■□□□□ 0.39
SEMA3DO95025 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SEMA3DO95025 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC17.48■□□□□ 0.39
SEMA3DO95025 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
SEMA3DO95025 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SEMA3DO95025 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
SEMA3DO95025 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
SEMA3DO95025 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SEMA3DO95025 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SEMA3DO95025 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SEMA3DO95025 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC17.47■□□□□ 0.39
SEMA3DO95025 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC17.47■□□□□ 0.39
SEMA3DO95025 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC17.47■□□□□ 0.39
SEMA3DO95025 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.47■□□□□ 0.39
SEMA3DO95025 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
SEMA3DO95025 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
SEMA3DO95025 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SEMA3DO95025 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SEMA3DO95025 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC17.47■□□□□ 0.39
SEMA3DO95025 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SEMA3DO95025 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SEMA3DO95025 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC17.47■□□□□ 0.39
SEMA3DO95025 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC17.47■□□□□ 0.39
SEMA3DO95025 MIR3917-201ENST00000580971 93 ntBASIC17.47■□□□□ 0.39
SEMA3DO95025 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC17.47■□□□□ 0.39
SEMA3DO95025 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC17.47■□□□□ 0.39
SEMA3DO95025 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SEMA3DO95025 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SEMA3DO95025 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
SEMA3DO95025 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SEMA3DO95025 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC17.47■□□□□ 0.39
SEMA3DO95025 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SEMA3DO95025 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
SEMA3DO95025 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC17.47■□□□□ 0.39
SEMA3DO95025 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SEMA3DO95025 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 168.2 ms