Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SGCEO43556 MADD-208ENST00000405573 1823 ntTSL 5 BASIC16.15■□□□□ 0.18
SGCEO43556 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
SGCEO43556 BICD1-207ENST00000551848 1962 ntBASIC16.15■□□□□ 0.18
SGCEO43556 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SGCEO43556 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
SGCEO43556 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SGCEO43556 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SGCEO43556 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
SGCEO43556 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SGCEO43556 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SGCEO43556 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SGCEO43556 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
SGCEO43556 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
SGCEO43556 AC087499.1-201ENST00000418141 1075 ntBASIC16.15■□□□□ 0.18
SGCEO43556 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC16.15■□□□□ 0.18
SGCEO43556 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC16.15■□□□□ 0.18
SGCEO43556 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SGCEO43556 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC16.15■□□□□ 0.18
SGCEO43556 AL162741.1-201ENST00000565563 1558 ntBASIC16.15■□□□□ 0.18
SGCEO43556 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SGCEO43556 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
SGCEO43556 AC112497.1-201ENST00000624824 639 ntBASIC16.15■□□□□ 0.18
SGCEO43556 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC16.15■□□□□ 0.18
SGCEO43556 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC16.15■□□□□ 0.18
SGCEO43556 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SGCEO43556 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC16.15■□□□□ 0.18
SGCEO43556 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC16.15■□□□□ 0.18
SGCEO43556 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
SGCEO43556 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SGCEO43556 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC16.15■□□□□ 0.18
SGCEO43556 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
SGCEO43556 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC16.15■□□□□ 0.18
SGCEO43556 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
SGCEO43556 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SGCEO43556 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SGCEO43556 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
SGCEO43556 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC16.14■□□□□ 0.18
SGCEO43556 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC16.14■□□□□ 0.18
SGCEO43556 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
SGCEO43556 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
SGCEO43556 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC16.14■□□□□ 0.17
SGCEO43556 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
SGCEO43556 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SGCEO43556 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SGCEO43556 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SGCEO43556 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SGCEO43556 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SGCEO43556 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SGCEO43556 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
SGCEO43556 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SGCEO43556 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC16.14■□□□□ 0.17
SGCEO43556 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SGCEO43556 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SGCEO43556 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SGCEO43556 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SGCEO43556 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC16.14■□□□□ 0.17
SGCEO43556 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC16.14■□□□□ 0.17
SGCEO43556 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC16.14■□□□□ 0.17
SGCEO43556 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC16.14■□□□□ 0.17
SGCEO43556 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
SGCEO43556 TMA16-209ENST00000513272 803 ntTSL 2 BASIC16.14■□□□□ 0.17
SGCEO43556 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SGCEO43556 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC16.14■□□□□ 0.17
SGCEO43556 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC16.14■□□□□ 0.17
SGCEO43556 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC16.14■□□□□ 0.17
SGCEO43556 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC16.14■□□□□ 0.17
SGCEO43556 NAT14-202ENST00000587400 416 ntTSL 5 BASIC16.14■□□□□ 0.17
SGCEO43556 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC16.14■□□□□ 0.17
SGCEO43556 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SGCEO43556 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SGCEO43556 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SGCEO43556 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
SGCEO43556 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
SGCEO43556 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SGCEO43556 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
SGCEO43556 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC16.14■□□□□ 0.17
SGCEO43556 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SGCEO43556 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SGCEO43556 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
SGCEO43556 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC16.13■□□□□ 0.17
SGCEO43556 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC16.13■□□□□ 0.17
SGCEO43556 OR6D1P-202ENST00000641007 5290 ntBASIC16.13■□□□□ 0.17
SGCEO43556 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC16.13■□□□□ 0.17
SGCEO43556 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
SGCEO43556 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC16.13■□□□□ 0.17
SGCEO43556 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC16.13■□□□□ 0.17
SGCEO43556 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC16.13■□□□□ 0.17
SGCEO43556 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC16.13■□□□□ 0.17
SGCEO43556 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
SGCEO43556 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC16.13■□□□□ 0.17
SGCEO43556 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC16.13■□□□□ 0.17
SGCEO43556 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SGCEO43556 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SGCEO43556 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SGCEO43556 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SGCEO43556 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SGCEO43556 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC16.13■□□□□ 0.17
SGCEO43556 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SGCEO43556 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms