Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCDHB3Q9Y5E6 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCDHB3Q9Y5E6 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCDHB3Q9Y5E6 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCDHB3Q9Y5E6 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
PCDHB3Q9Y5E6 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
PCDHB3Q9Y5E6 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCDHB3Q9Y5E6 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCDHB3Q9Y5E6 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCDHB3Q9Y5E6 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
PCDHB3Q9Y5E6 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCDHB3Q9Y5E6 KRT18P48-201ENST00000434763 852 ntBASIC17.92■□□□□ 0.46
PCDHB3Q9Y5E6 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC17.92■□□□□ 0.46
PCDHB3Q9Y5E6 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC17.92■□□□□ 0.46
PCDHB3Q9Y5E6 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
PCDHB3Q9Y5E6 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCDHB3Q9Y5E6 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC17.92■□□□□ 0.46
PCDHB3Q9Y5E6 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC17.92■□□□□ 0.46
PCDHB3Q9Y5E6 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC17.92■□□□□ 0.46
PCDHB3Q9Y5E6 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCDHB3Q9Y5E6 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.92■□□□□ 0.46
PCDHB3Q9Y5E6 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.92■□□□□ 0.46
PCDHB3Q9Y5E6 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PCDHB3Q9Y5E6 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC17.92■□□□□ 0.46
PCDHB3Q9Y5E6 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCDHB3Q9Y5E6 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCDHB3Q9Y5E6 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCDHB3Q9Y5E6 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC17.91■□□□□ 0.46
PCDHB3Q9Y5E6 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCDHB3Q9Y5E6 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCDHB3Q9Y5E6 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCDHB3Q9Y5E6 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.91■□□□□ 0.46
PCDHB3Q9Y5E6 GPAT2P1-201ENST00000444924 1672 ntBASIC17.91■□□□□ 0.46
PCDHB3Q9Y5E6 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
PCDHB3Q9Y5E6 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCDHB3Q9Y5E6 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCDHB3Q9Y5E6 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCDHB3Q9Y5E6 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCDHB3Q9Y5E6 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCDHB3Q9Y5E6 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCDHB3Q9Y5E6 GAD2-202ENST00000376248 680 ntTSL 5 BASIC17.91■□□□□ 0.46
PCDHB3Q9Y5E6 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCDHB3Q9Y5E6 STARP1-201ENST00000397973 869 ntBASIC17.91■□□□□ 0.46
PCDHB3Q9Y5E6 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
PCDHB3Q9Y5E6 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC17.91■□□□□ 0.46
PCDHB3Q9Y5E6 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
PCDHB3Q9Y5E6 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
PCDHB3Q9Y5E6 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC17.91■□□□□ 0.46
PCDHB3Q9Y5E6 KRT126P-201ENST00000549467 1181 ntBASIC17.91■□□□□ 0.46
PCDHB3Q9Y5E6 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
PCDHB3Q9Y5E6 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCDHB3Q9Y5E6 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
PCDHB3Q9Y5E6 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC17.91■□□□□ 0.46
PCDHB3Q9Y5E6 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
PCDHB3Q9Y5E6 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCDHB3Q9Y5E6 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCDHB3Q9Y5E6 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
PCDHB3Q9Y5E6 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCDHB3Q9Y5E6 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
PCDHB3Q9Y5E6 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCDHB3Q9Y5E6 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC17.91■□□□□ 0.46
PCDHB3Q9Y5E6 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCDHB3Q9Y5E6 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC17.91■□□□□ 0.46
PCDHB3Q9Y5E6 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PCDHB3Q9Y5E6 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHB3Q9Y5E6 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC17.9■□□□□ 0.46
PCDHB3Q9Y5E6 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
PCDHB3Q9Y5E6 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHB3Q9Y5E6 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC17.9■□□□□ 0.46
PCDHB3Q9Y5E6 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHB3Q9Y5E6 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC17.9■□□□□ 0.46
PCDHB3Q9Y5E6 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHB3Q9Y5E6 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC17.9■□□□□ 0.46
PCDHB3Q9Y5E6 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHB3Q9Y5E6 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHB3Q9Y5E6 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
PCDHB3Q9Y5E6 AL023284.2-201ENST00000405850 579 ntBASIC17.9■□□□□ 0.46
PCDHB3Q9Y5E6 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHB3Q9Y5E6 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHB3Q9Y5E6 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC17.9■□□□□ 0.46
PCDHB3Q9Y5E6 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHB3Q9Y5E6 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC17.9■□□□□ 0.46
PCDHB3Q9Y5E6 GCSHP2-201ENST00000560971 527 ntBASIC17.9■□□□□ 0.46
PCDHB3Q9Y5E6 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
PCDHB3Q9Y5E6 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC17.9■□□□□ 0.46
PCDHB3Q9Y5E6 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC17.9■□□□□ 0.46
PCDHB3Q9Y5E6 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHB3Q9Y5E6 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
PCDHB3Q9Y5E6 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
PCDHB3Q9Y5E6 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHB3Q9Y5E6 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHB3Q9Y5E6 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC17.9■□□□□ 0.46
PCDHB3Q9Y5E6 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHB3Q9Y5E6 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PCDHB3Q9Y5E6 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
PCDHB3Q9Y5E6 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
PCDHB3Q9Y5E6 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PCDHB3Q9Y5E6 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC17.89■□□□□ 0.45
PCDHB3Q9Y5E6 AC138932.1-201ENST00000534164 6830 ntBASIC17.89■□□□□ 0.45
PCDHB3Q9Y5E6 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms