Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC21.12■□□□□ 0.97
CTDP1Q9Y5B0 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC21.12■□□□□ 0.97
CTDP1Q9Y5B0 ABR-217ENST00000572441 563 ntTSL 4 BASIC21.12■□□□□ 0.97
CTDP1Q9Y5B0 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC21.12■□□□□ 0.97
CTDP1Q9Y5B0 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC21.12■□□□□ 0.97
CTDP1Q9Y5B0 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CTDP1Q9Y5B0 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CTDP1Q9Y5B0 SNAI3-AS1-205ENST00000568633 2096 ntBASIC21.12■□□□□ 0.97
CTDP1Q9Y5B0 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
CTDP1Q9Y5B0 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CTDP1Q9Y5B0 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC21.12■□□□□ 0.97
CTDP1Q9Y5B0 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CTDP1Q9Y5B0 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CTDP1Q9Y5B0 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC21.12■□□□□ 0.97
CTDP1Q9Y5B0 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CTDP1Q9Y5B0 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CTDP1Q9Y5B0 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
CTDP1Q9Y5B0 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CTDP1Q9Y5B0 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CTDP1Q9Y5B0 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
CTDP1Q9Y5B0 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC21.11■□□□□ 0.97
CTDP1Q9Y5B0 AC099343.3-201ENST00000605834 2503 ntBASIC21.11■□□□□ 0.97
CTDP1Q9Y5B0 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
CTDP1Q9Y5B0 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CTDP1Q9Y5B0 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CTDP1Q9Y5B0 OR6D1P-202ENST00000641007 5290 ntBASIC21.11■□□□□ 0.97
CTDP1Q9Y5B0 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
CTDP1Q9Y5B0 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CTDP1Q9Y5B0 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC21.11■□□□□ 0.97
CTDP1Q9Y5B0 TPM1-218ENST00000559281 851 ntTSL 5 BASIC21.11■□□□□ 0.97
CTDP1Q9Y5B0 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
CTDP1Q9Y5B0 TBCB-205ENST00000585746 875 ntTSL 3 BASIC21.11■□□□□ 0.97
CTDP1Q9Y5B0 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC21.11■□□□□ 0.97
CTDP1Q9Y5B0 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC21.11■□□□□ 0.97
CTDP1Q9Y5B0 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC21.11■□□□□ 0.97
CTDP1Q9Y5B0 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
CTDP1Q9Y5B0 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC21.11■□□□□ 0.97
CTDP1Q9Y5B0 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CTDP1Q9Y5B0 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CTDP1Q9Y5B0 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CTDP1Q9Y5B0 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CTDP1Q9Y5B0 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC21.11■□□□□ 0.97
CTDP1Q9Y5B0 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CTDP1Q9Y5B0 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
CTDP1Q9Y5B0 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CTDP1Q9Y5B0 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CTDP1Q9Y5B0 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC21.1■□□□□ 0.97
CTDP1Q9Y5B0 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC21.1■□□□□ 0.97
CTDP1Q9Y5B0 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CTDP1Q9Y5B0 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CTDP1Q9Y5B0 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
CTDP1Q9Y5B0 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CTDP1Q9Y5B0 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CTDP1Q9Y5B0 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC21.1■□□□□ 0.97
CTDP1Q9Y5B0 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
CTDP1Q9Y5B0 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CTDP1Q9Y5B0 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
CTDP1Q9Y5B0 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CTDP1Q9Y5B0 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CTDP1Q9Y5B0 DDT-203ENST00000403754 569 ntTSL 3 BASIC21.1■□□□□ 0.97
CTDP1Q9Y5B0 DDT-206ENST00000430101 573 ntTSL 2 BASIC21.1■□□□□ 0.97
CTDP1Q9Y5B0 RN7SL606P-201ENST00000472779 293 ntBASIC21.1■□□□□ 0.97
CTDP1Q9Y5B0 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
CTDP1Q9Y5B0 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CTDP1Q9Y5B0 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
CTDP1Q9Y5B0 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
CTDP1Q9Y5B0 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
CTDP1Q9Y5B0 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CTDP1Q9Y5B0 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CTDP1Q9Y5B0 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CTDP1Q9Y5B0 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CTDP1Q9Y5B0 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
CTDP1Q9Y5B0 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CTDP1Q9Y5B0 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CTDP1Q9Y5B0 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
CTDP1Q9Y5B0 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CTDP1Q9Y5B0 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CTDP1Q9Y5B0 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC21.09■□□□□ 0.97
CTDP1Q9Y5B0 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
CTDP1Q9Y5B0 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CTDP1Q9Y5B0 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CTDP1Q9Y5B0 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC21.09■□□□□ 0.97
CTDP1Q9Y5B0 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC21.09■□□□□ 0.97
CTDP1Q9Y5B0 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CTDP1Q9Y5B0 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC21.09■□□□□ 0.97
CTDP1Q9Y5B0 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
CTDP1Q9Y5B0 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC21.09■□□□□ 0.97
CTDP1Q9Y5B0 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CTDP1Q9Y5B0 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC21.09■□□□□ 0.97
CTDP1Q9Y5B0 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CTDP1Q9Y5B0 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC21.09■□□□□ 0.97
CTDP1Q9Y5B0 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC21.09■□□□□ 0.97
CTDP1Q9Y5B0 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC21.09■□□□□ 0.97
CTDP1Q9Y5B0 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC21.09■□□□□ 0.97
CTDP1Q9Y5B0 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC21.09■□□□□ 0.97
CTDP1Q9Y5B0 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CTDP1Q9Y5B0 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CTDP1Q9Y5B0 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CTDP1Q9Y5B0 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
CTDP1Q9Y5B0 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms