Protein–RNA interactions for Protein: Q9UBI1

COMMD3, COMM domain-containing protein 3, humanhuman

Predictions only

Length 195 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3Q9UBI1 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC16.1■□□□□ 0.17
COMMD3Q9UBI1 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
COMMD3Q9UBI1 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COMMD3Q9UBI1 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COMMD3Q9UBI1 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
COMMD3Q9UBI1 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COMMD3Q9UBI1 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COMMD3Q9UBI1 UBALD1-205ENST00000590891 2641 ntBASIC16.1■□□□□ 0.17
COMMD3Q9UBI1 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
COMMD3Q9UBI1 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
COMMD3Q9UBI1 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COMMD3Q9UBI1 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
COMMD3Q9UBI1 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COMMD3Q9UBI1 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC16.1■□□□□ 0.17
COMMD3Q9UBI1 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
COMMD3Q9UBI1 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COMMD3Q9UBI1 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
COMMD3Q9UBI1 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
COMMD3Q9UBI1 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
COMMD3Q9UBI1 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COMMD3Q9UBI1 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
COMMD3Q9UBI1 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC16.09■□□□□ 0.17
COMMD3Q9UBI1 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
COMMD3Q9UBI1 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COMMD3Q9UBI1 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COMMD3Q9UBI1 LINC00602-201ENST00000629776 2065 ntBASIC16.09■□□□□ 0.17
COMMD3Q9UBI1 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
COMMD3Q9UBI1 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COMMD3Q9UBI1 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
COMMD3Q9UBI1 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
COMMD3Q9UBI1 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COMMD3Q9UBI1 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
COMMD3Q9UBI1 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
COMMD3Q9UBI1 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COMMD3Q9UBI1 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
COMMD3Q9UBI1 AL160286.2-201ENST00000567150 934 ntBASIC16.09■□□□□ 0.17
COMMD3Q9UBI1 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC16.09■□□□□ 0.17
COMMD3Q9UBI1 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC16.09■□□□□ 0.17
COMMD3Q9UBI1 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
COMMD3Q9UBI1 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
COMMD3Q9UBI1 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
COMMD3Q9UBI1 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COMMD3Q9UBI1 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
COMMD3Q9UBI1 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
COMMD3Q9UBI1 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
COMMD3Q9UBI1 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
COMMD3Q9UBI1 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COMMD3Q9UBI1 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
COMMD3Q9UBI1 AC046158.3-201ENST00000624947 2558 ntBASIC16.09■□□□□ 0.17
COMMD3Q9UBI1 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COMMD3Q9UBI1 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC16.09■□□□□ 0.17
COMMD3Q9UBI1 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC16.09■□□□□ 0.17
COMMD3Q9UBI1 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC16.09■□□□□ 0.17
COMMD3Q9UBI1 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COMMD3Q9UBI1 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COMMD3Q9UBI1 MYLKP1-201ENST00000509077 1580 ntBASIC16.09■□□□□ 0.17
COMMD3Q9UBI1 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
COMMD3Q9UBI1 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
COMMD3Q9UBI1 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
COMMD3Q9UBI1 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC16.08■□□□□ 0.17
COMMD3Q9UBI1 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.17
COMMD3Q9UBI1 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC16.08■□□□□ 0.16
COMMD3Q9UBI1 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
COMMD3Q9UBI1 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC16.08■□□□□ 0.16
COMMD3Q9UBI1 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
COMMD3Q9UBI1 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
COMMD3Q9UBI1 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
COMMD3Q9UBI1 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
COMMD3Q9UBI1 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
COMMD3Q9UBI1 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC16.08■□□□□ 0.16
COMMD3Q9UBI1 HSCB-202ENST00000398941 955 ntTSL 2 BASIC16.08■□□□□ 0.16
COMMD3Q9UBI1 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC16.08■□□□□ 0.16
COMMD3Q9UBI1 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC16.08■□□□□ 0.16
COMMD3Q9UBI1 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
COMMD3Q9UBI1 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
COMMD3Q9UBI1 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC16.08■□□□□ 0.16
COMMD3Q9UBI1 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
COMMD3Q9UBI1 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
COMMD3Q9UBI1 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
COMMD3Q9UBI1 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
COMMD3Q9UBI1 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
COMMD3Q9UBI1 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
COMMD3Q9UBI1 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
COMMD3Q9UBI1 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC16.08■□□□□ 0.16
COMMD3Q9UBI1 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
COMMD3Q9UBI1 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
COMMD3Q9UBI1 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
COMMD3Q9UBI1 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
COMMD3Q9UBI1 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.08■□□□□ 0.16
COMMD3Q9UBI1 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COMMD3Q9UBI1 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC16.07■□□□□ 0.16
COMMD3Q9UBI1 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
COMMD3Q9UBI1 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC16.07■□□□□ 0.16
COMMD3Q9UBI1 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COMMD3Q9UBI1 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COMMD3Q9UBI1 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
COMMD3Q9UBI1 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC16.07■□□□□ 0.16
COMMD3Q9UBI1 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
COMMD3Q9UBI1 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
COMMD3Q9UBI1 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC16.07■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms