Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
VCX3AQ9NNX9 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
VCX3AQ9NNX9 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
VCX3AQ9NNX9 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
VCX3AQ9NNX9 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VCX3AQ9NNX9 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VCX3AQ9NNX9 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VCX3AQ9NNX9 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC17.1■□□□□ 0.33
VCX3AQ9NNX9 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
VCX3AQ9NNX9 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
VCX3AQ9NNX9 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VCX3AQ9NNX9 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC17.1■□□□□ 0.33
VCX3AQ9NNX9 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VCX3AQ9NNX9 AL136379.1-201ENST00000623471 2642 ntBASIC17.1■□□□□ 0.33
VCX3AQ9NNX9 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC17.1■□□□□ 0.33
VCX3AQ9NNX9 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VCX3AQ9NNX9 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VCX3AQ9NNX9 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC17.1■□□□□ 0.33
VCX3AQ9NNX9 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VCX3AQ9NNX9 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC17.1■□□□□ 0.33
VCX3AQ9NNX9 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
VCX3AQ9NNX9 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC17.1■□□□□ 0.33
VCX3AQ9NNX9 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VCX3AQ9NNX9 AL591742.1-201ENST00000604433 565 ntBASIC17.1■□□□□ 0.33
VCX3AQ9NNX9 AL136162.1-201ENST00000607711 1078 ntBASIC17.1■□□□□ 0.33
VCX3AQ9NNX9 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
VCX3AQ9NNX9 AC135279.3-201ENST00000610945 1311 ntBASIC17.1■□□□□ 0.33
VCX3AQ9NNX9 AC105020.1-201ENST00000435356 2205 ntBASIC17.1■□□□□ 0.33
VCX3AQ9NNX9 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC17.1■□□□□ 0.33
VCX3AQ9NNX9 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC17.1■□□□□ 0.33
VCX3AQ9NNX9 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
VCX3AQ9NNX9 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VCX3AQ9NNX9 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VCX3AQ9NNX9 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VCX3AQ9NNX9 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
VCX3AQ9NNX9 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC17.1■□□□□ 0.33
VCX3AQ9NNX9 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VCX3AQ9NNX9 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
VCX3AQ9NNX9 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
VCX3AQ9NNX9 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VCX3AQ9NNX9 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC17.09■□□□□ 0.33
VCX3AQ9NNX9 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC17.09■□□□□ 0.33
VCX3AQ9NNX9 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
VCX3AQ9NNX9 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VCX3AQ9NNX9 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC17.09■□□□□ 0.33
VCX3AQ9NNX9 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VCX3AQ9NNX9 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VCX3AQ9NNX9 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VCX3AQ9NNX9 CALM3-202ENST00000391918 702 ntTSL 2 BASIC17.09■□□□□ 0.33
VCX3AQ9NNX9 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC17.09■□□□□ 0.33
VCX3AQ9NNX9 PBX1-209ENST00000485769 834 ntTSL 2 BASIC17.09■□□□□ 0.33
VCX3AQ9NNX9 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC17.09■□□□□ 0.33
VCX3AQ9NNX9 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC17.09■□□□□ 0.33
VCX3AQ9NNX9 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC17.09■□□□□ 0.33
VCX3AQ9NNX9 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
VCX3AQ9NNX9 AC105020.6-201ENST00000621523 1217 ntBASIC17.09■□□□□ 0.33
VCX3AQ9NNX9 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
VCX3AQ9NNX9 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VCX3AQ9NNX9 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VCX3AQ9NNX9 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.09■□□□□ 0.33
VCX3AQ9NNX9 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VCX3AQ9NNX9 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
VCX3AQ9NNX9 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VCX3AQ9NNX9 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VCX3AQ9NNX9 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC17.09■□□□□ 0.33
VCX3AQ9NNX9 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC17.09■□□□□ 0.33
VCX3AQ9NNX9 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
VCX3AQ9NNX9 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC17.09■□□□□ 0.33
VCX3AQ9NNX9 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VCX3AQ9NNX9 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC17.08■□□□□ 0.33
VCX3AQ9NNX9 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
VCX3AQ9NNX9 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC17.08■□□□□ 0.33
VCX3AQ9NNX9 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC17.08■□□□□ 0.33
VCX3AQ9NNX9 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC17.08■□□□□ 0.33
VCX3AQ9NNX9 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
VCX3AQ9NNX9 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
VCX3AQ9NNX9 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC17.08■□□□□ 0.33
VCX3AQ9NNX9 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VCX3AQ9NNX9 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
VCX3AQ9NNX9 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VCX3AQ9NNX9 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VCX3AQ9NNX9 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VCX3AQ9NNX9 BRWD1-AS2-201ENST00000603064 1028 ntBASIC17.08■□□□□ 0.32
VCX3AQ9NNX9 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC17.08■□□□□ 0.32
VCX3AQ9NNX9 MYC-208ENST00000641036 567 ntBASIC17.08■□□□□ 0.32
VCX3AQ9NNX9 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
VCX3AQ9NNX9 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
VCX3AQ9NNX9 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
VCX3AQ9NNX9 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC17.08■□□□□ 0.32
VCX3AQ9NNX9 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC17.08■□□□□ 0.32
VCX3AQ9NNX9 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
VCX3AQ9NNX9 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
VCX3AQ9NNX9 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
VCX3AQ9NNX9 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
VCX3AQ9NNX9 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VCX3AQ9NNX9 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VCX3AQ9NNX9 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
VCX3AQ9NNX9 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC17.07■□□□□ 0.32
VCX3AQ9NNX9 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
VCX3AQ9NNX9 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms