Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
TM9SF3Q9HD45 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
TM9SF3Q9HD45 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC18.27■□□□□ 0.52
TM9SF3Q9HD45 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
TM9SF3Q9HD45 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC18.27■□□□□ 0.52
TM9SF3Q9HD45 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TM9SF3Q9HD45 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
TM9SF3Q9HD45 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC18.27■□□□□ 0.52
TM9SF3Q9HD45 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
TM9SF3Q9HD45 GUSBP12-201ENST00000513727 720 ntBASIC18.27■□□□□ 0.52
TM9SF3Q9HD45 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
TM9SF3Q9HD45 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC18.27■□□□□ 0.52
TM9SF3Q9HD45 REEP1-209ENST00000541910 969 ntTSL 2 BASIC18.27■□□□□ 0.52
TM9SF3Q9HD45 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TM9SF3Q9HD45 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
TM9SF3Q9HD45 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
TM9SF3Q9HD45 AC124864.1-201ENST00000623408 392 ntBASIC18.27■□□□□ 0.52
TM9SF3Q9HD45 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
TM9SF3Q9HD45 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TM9SF3Q9HD45 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TM9SF3Q9HD45 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
TM9SF3Q9HD45 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
TM9SF3Q9HD45 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
TM9SF3Q9HD45 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC18.27■□□□□ 0.51
TM9SF3Q9HD45 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC18.27■□□□□ 0.51
TM9SF3Q9HD45 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TM9SF3Q9HD45 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
TM9SF3Q9HD45 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC18.26■□□□□ 0.51
TM9SF3Q9HD45 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
TM9SF3Q9HD45 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC18.26■□□□□ 0.51
TM9SF3Q9HD45 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
TM9SF3Q9HD45 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC18.26■□□□□ 0.51
TM9SF3Q9HD45 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TM9SF3Q9HD45 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TM9SF3Q9HD45 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TM9SF3Q9HD45 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TM9SF3Q9HD45 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TM9SF3Q9HD45 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TM9SF3Q9HD45 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TM9SF3Q9HD45 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC18.26■□□□□ 0.51
TM9SF3Q9HD45 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TM9SF3Q9HD45 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TM9SF3Q9HD45 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC18.26■□□□□ 0.51
TM9SF3Q9HD45 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
TM9SF3Q9HD45 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC18.26■□□□□ 0.51
TM9SF3Q9HD45 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC18.26■□□□□ 0.51
TM9SF3Q9HD45 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TM9SF3Q9HD45 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC18.26■□□□□ 0.51
TM9SF3Q9HD45 PPOX-214ENST00000535223 664 ntTSL 3 BASIC18.26■□□□□ 0.51
TM9SF3Q9HD45 TPM1-218ENST00000559281 851 ntTSL 5 BASIC18.26■□□□□ 0.51
TM9SF3Q9HD45 AC009065.1-201ENST00000564055 1225 ntBASIC18.26■□□□□ 0.51
TM9SF3Q9HD45 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC18.26■□□□□ 0.51
TM9SF3Q9HD45 GXYLT1P4-201ENST00000613576 1192 ntBASIC18.26■□□□□ 0.51
TM9SF3Q9HD45 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC18.26■□□□□ 0.51
TM9SF3Q9HD45 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TM9SF3Q9HD45 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC18.26■□□□□ 0.51
TM9SF3Q9HD45 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TM9SF3Q9HD45 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TM9SF3Q9HD45 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
TM9SF3Q9HD45 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
TM9SF3Q9HD45 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC18.25■□□□□ 0.51
TM9SF3Q9HD45 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC18.25■□□□□ 0.51
TM9SF3Q9HD45 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.25■□□□□ 0.51
TM9SF3Q9HD45 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TM9SF3Q9HD45 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TM9SF3Q9HD45 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TM9SF3Q9HD45 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TM9SF3Q9HD45 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
TM9SF3Q9HD45 DFFB-203ENST00000341385 572 ntTSL 5 BASIC18.25■□□□□ 0.51
TM9SF3Q9HD45 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC18.25■□□□□ 0.51
TM9SF3Q9HD45 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC18.25■□□□□ 0.51
TM9SF3Q9HD45 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
TM9SF3Q9HD45 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
TM9SF3Q9HD45 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC18.25■□□□□ 0.51
TM9SF3Q9HD45 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
TM9SF3Q9HD45 RN7SL606P-201ENST00000472779 293 ntBASIC18.25■□□□□ 0.51
TM9SF3Q9HD45 BMF-207ENST00000559701 630 ntTSL 3 BASIC18.25■□□□□ 0.51
TM9SF3Q9HD45 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC18.25■□□□□ 0.51
TM9SF3Q9HD45 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
TM9SF3Q9HD45 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC18.25■□□□□ 0.51
TM9SF3Q9HD45 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
TM9SF3Q9HD45 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC18.25■□□□□ 0.51
TM9SF3Q9HD45 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
TM9SF3Q9HD45 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
TM9SF3Q9HD45 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TM9SF3Q9HD45 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.25■□□□□ 0.51
TM9SF3Q9HD45 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
TM9SF3Q9HD45 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TM9SF3Q9HD45 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TM9SF3Q9HD45 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.25■□□□□ 0.51
TM9SF3Q9HD45 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
TM9SF3Q9HD45 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TM9SF3Q9HD45 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
TM9SF3Q9HD45 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
TM9SF3Q9HD45 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC18.24■□□□□ 0.51
TM9SF3Q9HD45 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
TM9SF3Q9HD45 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
TM9SF3Q9HD45 IGHV3-47-201ENST00000425060 335 ntBASIC18.24■□□□□ 0.51
TM9SF3Q9HD45 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC18.24■□□□□ 0.51
TM9SF3Q9HD45 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms