Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
MMP28Q9H239 CALM3-202ENST00000391918 702 ntTSL 2 BASIC16.15■□□□□ 0.18
MMP28Q9H239 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC16.15■□□□□ 0.18
MMP28Q9H239 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC16.15■□□□□ 0.18
MMP28Q9H239 UNC93B5-201ENST00000530315 699 ntBASIC16.15■□□□□ 0.18
MMP28Q9H239 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
MMP28Q9H239 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC16.15■□□□□ 0.18
MMP28Q9H239 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC16.15■□□□□ 0.18
MMP28Q9H239 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC16.15■□□□□ 0.18
MMP28Q9H239 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
MMP28Q9H239 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
MMP28Q9H239 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16.15■□□□□ 0.18
MMP28Q9H239 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
MMP28Q9H239 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
MMP28Q9H239 AC104417.2-201ENST00000562989 1793 ntBASIC16.15■□□□□ 0.18
MMP28Q9H239 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
MMP28Q9H239 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
MMP28Q9H239 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
MMP28Q9H239 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
MMP28Q9H239 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC16.15■□□□□ 0.18
MMP28Q9H239 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
MMP28Q9H239 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
MMP28Q9H239 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC16.15■□□□□ 0.18
MMP28Q9H239 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC16.15■□□□□ 0.18
MMP28Q9H239 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
MMP28Q9H239 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.18
MMP28Q9H239 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
MMP28Q9H239 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
MMP28Q9H239 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
MMP28Q9H239 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
MMP28Q9H239 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC16.14■□□□□ 0.17
MMP28Q9H239 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC16.14■□□□□ 0.17
MMP28Q9H239 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC16.14■□□□□ 0.17
MMP28Q9H239 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
MMP28Q9H239 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
MMP28Q9H239 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
MMP28Q9H239 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC16.14■□□□□ 0.17
MMP28Q9H239 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
MMP28Q9H239 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
MMP28Q9H239 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC16.14■□□□□ 0.17
MMP28Q9H239 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC16.14■□□□□ 0.17
MMP28Q9H239 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
MMP28Q9H239 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
MMP28Q9H239 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC16.14■□□□□ 0.17
MMP28Q9H239 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
MMP28Q9H239 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
MMP28Q9H239 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
MMP28Q9H239 ESRRAP1-201ENST00000400596 1257 ntBASIC16.14■□□□□ 0.17
MMP28Q9H239 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC16.14■□□□□ 0.17
MMP28Q9H239 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC16.14■□□□□ 0.17
MMP28Q9H239 MAX-217ENST00000557277 728 ntTSL 3 BASIC16.14■□□□□ 0.17
MMP28Q9H239 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
MMP28Q9H239 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
MMP28Q9H239 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
MMP28Q9H239 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
MMP28Q9H239 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC16.14■□□□□ 0.17
MMP28Q9H239 AP001094.4-201ENST00000579008 2176 ntBASIC16.14■□□□□ 0.17
MMP28Q9H239 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC16.14■□□□□ 0.17
MMP28Q9H239 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC16.14■□□□□ 0.17
MMP28Q9H239 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
MMP28Q9H239 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
MMP28Q9H239 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
MMP28Q9H239 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
MMP28Q9H239 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC16.14■□□□□ 0.17
MMP28Q9H239 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
MMP28Q9H239 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
MMP28Q9H239 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
MMP28Q9H239 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC16.13■□□□□ 0.17
MMP28Q9H239 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC16.13■□□□□ 0.17
MMP28Q9H239 CROCCP1-201ENST00000426910 5675 ntBASIC16.13■□□□□ 0.17
MMP28Q9H239 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
MMP28Q9H239 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
MMP28Q9H239 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
MMP28Q9H239 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
MMP28Q9H239 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
MMP28Q9H239 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
MMP28Q9H239 GAS7-202ENST00000396115 929 ntTSL 5 BASIC16.13■□□□□ 0.17
MMP28Q9H239 RPS2P52-201ENST00000469610 820 ntBASIC16.13■□□□□ 0.17
MMP28Q9H239 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC16.13■□□□□ 0.17
MMP28Q9H239 UNC93B4-201ENST00000505679 747 ntBASIC16.13■□□□□ 0.17
MMP28Q9H239 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC16.13■□□□□ 0.17
MMP28Q9H239 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC16.13■□□□□ 0.17
MMP28Q9H239 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
MMP28Q9H239 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC16.13■□□□□ 0.17
MMP28Q9H239 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
MMP28Q9H239 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC16.13■□□□□ 0.17
MMP28Q9H239 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
MMP28Q9H239 FLYWCH1P1-201ENST00000460917 1874 ntBASIC16.13■□□□□ 0.17
MMP28Q9H239 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
MMP28Q9H239 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
MMP28Q9H239 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
MMP28Q9H239 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
MMP28Q9H239 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
MMP28Q9H239 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
MMP28Q9H239 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC16.13■□□□□ 0.17
MMP28Q9H239 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
MMP28Q9H239 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
MMP28Q9H239 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
MMP28Q9H239 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
MMP28Q9H239 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms