Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC20.92■□□□□ 0.94
USP28Q96RU2 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP28Q96RU2 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
USP28Q96RU2 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
USP28Q96RU2 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC20.92■□□□□ 0.94
USP28Q96RU2 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP28Q96RU2 AC112497.1-201ENST00000624824 639 ntBASIC20.92■□□□□ 0.94
USP28Q96RU2 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP28Q96RU2 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP28Q96RU2 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC20.92■□□□□ 0.94
USP28Q96RU2 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP28Q96RU2 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP28Q96RU2 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
USP28Q96RU2 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
USP28Q96RU2 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC20.92■□□□□ 0.94
USP28Q96RU2 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC20.92■□□□□ 0.94
USP28Q96RU2 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP28Q96RU2 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC20.92■□□□□ 0.94
USP28Q96RU2 AC012317.2-201ENST00000623305 2251 ntBASIC20.92■□□□□ 0.94
USP28Q96RU2 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP28Q96RU2 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
USP28Q96RU2 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP28Q96RU2 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP28Q96RU2 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP28Q96RU2 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP28Q96RU2 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP28Q96RU2 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP28Q96RU2 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP28Q96RU2 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
USP28Q96RU2 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP28Q96RU2 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
USP28Q96RU2 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC20.91■□□□□ 0.94
USP28Q96RU2 PHB2-202ENST00000440277 996 ntTSL 5 BASIC20.91■□□□□ 0.94
USP28Q96RU2 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC20.91■□□□□ 0.94
USP28Q96RU2 EML3-212ENST00000494176 2901 ntTSL 2 BASIC20.91■□□□□ 0.94
USP28Q96RU2 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC20.91■□□□□ 0.94
USP28Q96RU2 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP28Q96RU2 EML3-216ENST00000529309 2909 ntTSL 2 BASIC20.91■□□□□ 0.94
USP28Q96RU2 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC20.91■□□□□ 0.94
USP28Q96RU2 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC20.91■□□□□ 0.94
USP28Q96RU2 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
USP28Q96RU2 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC20.91■□□□□ 0.94
USP28Q96RU2 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC20.91■□□□□ 0.94
USP28Q96RU2 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC20.91■□□□□ 0.94
USP28Q96RU2 C2orf69P3-201ENST00000565542 1120 ntBASIC20.91■□□□□ 0.94
USP28Q96RU2 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC20.91■□□□□ 0.94
USP28Q96RU2 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC20.91■□□□□ 0.94
USP28Q96RU2 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
USP28Q96RU2 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
USP28Q96RU2 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP28Q96RU2 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC20.9■□□□□ 0.94
USP28Q96RU2 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
USP28Q96RU2 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
USP28Q96RU2 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
USP28Q96RU2 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
USP28Q96RU2 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
USP28Q96RU2 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
USP28Q96RU2 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
USP28Q96RU2 FZD10-202ENST00000539839 3282 ntBASIC20.9■□□□□ 0.94
USP28Q96RU2 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
USP28Q96RU2 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
USP28Q96RU2 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
USP28Q96RU2 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
USP28Q96RU2 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
USP28Q96RU2 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
USP28Q96RU2 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
USP28Q96RU2 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC20.9■□□□□ 0.94
USP28Q96RU2 ETFA-216ENST00000560726 942 ntTSL 3 BASIC20.9■□□□□ 0.94
USP28Q96RU2 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC20.9■□□□□ 0.94
USP28Q96RU2 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC20.9■□□□□ 0.94
USP28Q96RU2 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC20.9■□□□□ 0.94
USP28Q96RU2 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC20.9■□□□□ 0.94
USP28Q96RU2 AC010653.2-201ENST00000623505 997 ntBASIC20.9■□□□□ 0.94
USP28Q96RU2 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC20.9■□□□□ 0.94
USP28Q96RU2 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC20.9■□□□□ 0.94
USP28Q96RU2 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
USP28Q96RU2 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
USP28Q96RU2 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
USP28Q96RU2 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC20.9■□□□□ 0.94
USP28Q96RU2 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
USP28Q96RU2 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
USP28Q96RU2 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
USP28Q96RU2 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
USP28Q96RU2 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
USP28Q96RU2 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.94
USP28Q96RU2 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.94
USP28Q96RU2 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
USP28Q96RU2 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
USP28Q96RU2 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
USP28Q96RU2 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
USP28Q96RU2 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
USP28Q96RU2 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC20.89■□□□□ 0.93
USP28Q96RU2 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
USP28Q96RU2 GXYLT1P6-201ENST00000456472 1187 ntBASIC20.89■□□□□ 0.93
USP28Q96RU2 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC20.89■□□□□ 0.93
USP28Q96RU2 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
USP28Q96RU2 AC010947.1-201ENST00000623454 693 ntBASIC20.89■□□□□ 0.93
USP28Q96RU2 GLDC-219ENST00000640208 420 ntTSL 2 BASIC20.89■□□□□ 0.93
USP28Q96RU2 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
USP28Q96RU2 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms