Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC17.86■□□□□ 0.45
CFAP54Q96N23 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CFAP54Q96N23 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CFAP54Q96N23 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CFAP54Q96N23 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC17.85■□□□□ 0.45
CFAP54Q96N23 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CFAP54Q96N23 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
CFAP54Q96N23 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC17.85■□□□□ 0.45
CFAP54Q96N23 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
CFAP54Q96N23 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
CFAP54Q96N23 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CFAP54Q96N23 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
CFAP54Q96N23 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC17.85■□□□□ 0.45
CFAP54Q96N23 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CFAP54Q96N23 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC17.85■□□□□ 0.45
CFAP54Q96N23 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CFAP54Q96N23 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CFAP54Q96N23 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC17.85■□□□□ 0.45
CFAP54Q96N23 AC104390.1-201ENST00000555663 520 ntBASIC17.85■□□□□ 0.45
CFAP54Q96N23 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC17.85■□□□□ 0.45
CFAP54Q96N23 YTHDF3-AS1-201ENST00000603538 718 ntBASIC17.85■□□□□ 0.45
CFAP54Q96N23 AP000867.4-201ENST00000641616 219 ntBASIC17.85■□□□□ 0.45
CFAP54Q96N23 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CFAP54Q96N23 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
CFAP54Q96N23 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CFAP54Q96N23 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
CFAP54Q96N23 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC17.85■□□□□ 0.45
CFAP54Q96N23 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC17.85■□□□□ 0.45
CFAP54Q96N23 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CFAP54Q96N23 CLDN5-201ENST00000403084 2357 ntBASIC17.85■□□□□ 0.45
CFAP54Q96N23 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
CFAP54Q96N23 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
CFAP54Q96N23 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CFAP54Q96N23 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC17.85■□□□□ 0.45
CFAP54Q96N23 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC17.85■□□□□ 0.45
CFAP54Q96N23 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CFAP54Q96N23 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC17.85■□□□□ 0.45
CFAP54Q96N23 CEND1P1-201ENST00000451006 455 ntBASIC17.85■□□□□ 0.45
CFAP54Q96N23 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CFAP54Q96N23 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CFAP54Q96N23 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
CFAP54Q96N23 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CFAP54Q96N23 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC17.84■□□□□ 0.45
CFAP54Q96N23 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CFAP54Q96N23 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC17.84■□□□□ 0.45
CFAP54Q96N23 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC17.84■□□□□ 0.45
CFAP54Q96N23 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CFAP54Q96N23 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
CFAP54Q96N23 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CFAP54Q96N23 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CFAP54Q96N23 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC17.84■□□□□ 0.45
CFAP54Q96N23 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
CFAP54Q96N23 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CFAP54Q96N23 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC17.84■□□□□ 0.45
CFAP54Q96N23 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
CFAP54Q96N23 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC17.84■□□□□ 0.45
CFAP54Q96N23 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CFAP54Q96N23 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CFAP54Q96N23 AC097374.2-201ENST00000618617 1306 ntBASIC17.83■□□□□ 0.45
CFAP54Q96N23 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CFAP54Q96N23 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC17.83■□□□□ 0.45
CFAP54Q96N23 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC17.83■□□□□ 0.45
CFAP54Q96N23 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
CFAP54Q96N23 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
CFAP54Q96N23 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC17.83■□□□□ 0.45
CFAP54Q96N23 POLD4-211ENST00000539074 714 ntTSL 3 BASIC17.83■□□□□ 0.45
CFAP54Q96N23 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC17.83■□□□□ 0.45
CFAP54Q96N23 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
CFAP54Q96N23 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
CFAP54Q96N23 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC17.83■□□□□ 0.45
CFAP54Q96N23 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC17.83■□□□□ 0.45
CFAP54Q96N23 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC17.83■□□□□ 0.45
CFAP54Q96N23 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CFAP54Q96N23 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC17.83■□□□□ 0.44
CFAP54Q96N23 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
CFAP54Q96N23 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
CFAP54Q96N23 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC17.83■□□□□ 0.44
CFAP54Q96N23 AC236430.1-201ENST00000402231 743 ntBASIC17.83■□□□□ 0.44
CFAP54Q96N23 MTDHP4-201ENST00000600287 670 ntBASIC17.83■□□□□ 0.44
CFAP54Q96N23 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CFAP54Q96N23 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CFAP54Q96N23 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
CFAP54Q96N23 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC17.83■□□□□ 0.44
CFAP54Q96N23 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CFAP54Q96N23 CECR7-204ENST00000609932 568 ntTSL 2 BASIC17.83■□□□□ 0.44
CFAP54Q96N23 AL139288.1-201ENST00000623748 933 ntBASIC17.83■□□□□ 0.44
CFAP54Q96N23 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CFAP54Q96N23 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
CFAP54Q96N23 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC17.82■□□□□ 0.44
CFAP54Q96N23 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CFAP54Q96N23 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
CFAP54Q96N23 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CFAP54Q96N23 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
CFAP54Q96N23 ARSEP1-201ENST00000420443 635 ntBASIC17.82■□□□□ 0.44
CFAP54Q96N23 SLBP-205ENST00000488267 987 ntTSL 2 BASIC17.82■□□□□ 0.44
CFAP54Q96N23 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC17.82■□□□□ 0.44
CFAP54Q96N23 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
CFAP54Q96N23 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC17.82■□□□□ 0.44
CFAP54Q96N23 KRT8P7-201ENST00000533003 1432 ntBASIC17.82■□□□□ 0.44
CFAP54Q96N23 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms