Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 SLC23A2-202ENST00000379333 6962 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.917e-15■□□□□ 10.3
DDX55Q8NHQ9 SLC23A2-201ENST00000338244 6944 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.967e-15■□□□□ 10.3
DDX55Q8NHQ9 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.963e-19■□□□□ 10.3
DDX55Q8NHQ9 HSPD1-201ENST00000345042 2299 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.123e-19■□□□□ 10.3
DDX55Q8NHQ9 SH3GLB2-204ENST00000416230 720 ntTSL 226.3■■□□□ 1.87e-8■□□□□ 10.3
DDX55Q8NHQ9 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC17.83■□□□□ 0.445e-10■□□□□ 10.3
DDX55Q8NHQ9 VAMP8-201ENST00000263864 774 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.225e-10■□□□□ 10.3
DDX55Q8NHQ9 VAMP8-202ENST00000409760 805 ntTSL 3 BASIC11.78□□□□□ -0.525e-10■□□□□ 10.3
DDX55Q8NHQ9 KRT8-208ENST00000547031 883 ntTSL 220.29■□□□□ 0.841e-6■□□□□ 10.3
DDX55Q8NHQ9 H3F3B-210ENST00000591890 783 ntTSL 3 BASIC13.31□□□□□ -0.289e-18■□□□□ 10.3
DDX55Q8NHQ9 DCXR-212ENST00000579842 715 ntTSL 324.75■■□□□ 1.559e-8■□□□□ 10.3
DDX55Q8NHQ9 PRAME-205ENST00000405655 2179 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.11e-83■□□□□ 10.3
DDX55Q8NHQ9 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.011e-83■□□□□ 10.3
DDX55Q8NHQ9 PRAME-202ENST00000398743 2196 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.031e-83■□□□□ 10.3
DDX55Q8NHQ9 PRAME-203ENST00000402697 2057 ntAPPRIS P2 TSL 5 BASIC13.92□□□□□ -0.181e-83■□□□□ 10.3
DDX55Q8NHQ9 PRAME-213ENST00000492657 2831 ntTSL 1 (best)13.77□□□□□ -0.211e-83■□□□□ 10.3
DDX55Q8NHQ9 PRAME-201ENST00000398741 2202 ntAPPRIS P2 TSL 5 BASIC13.64□□□□□ -0.231e-83■□□□□ 10.3
DDX55Q8NHQ9 PSME1-207ENST00000560420 922 ntTSL 218.04■□□□□ 0.485e-7■□□□□ 10.3
DDX55Q8NHQ9 PSME1-206ENST00000559741 763 ntTSL 312.21□□□□□ -0.455e-7■□□□□ 10.3
DDX55Q8NHQ9 PSME1-204ENST00000558112 651 ntTSL 511.59□□□□□ -0.555e-7■□□□□ 10.3
DDX55Q8NHQ9 RPS3-213ENST00000529285 550 ntTSL 524.49■■□□□ 1.511e-15■□□□□ 10.3
DDX55Q8NHQ9 RPS3-206ENST00000526248 771 ntTSL 519.61■□□□□ 0.731e-15■□□□□ 10.3
DDX55Q8NHQ9 RPS3-201ENST00000278572 907 ntTSL 3 BASIC18.36■□□□□ 0.531e-15■□□□□ 10.3
DDX55Q8NHQ9 RPS3-216ENST00000530721 796 ntTSL 315.91■□□□□ 0.141e-15■□□□□ 10.3
DDX55Q8NHQ9 RPS3-218ENST00000532872 737 ntTSL 315.91■□□□□ 0.141e-15■□□□□ 10.3
DDX55Q8NHQ9 RPS3-209ENST00000527446 1306 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.011e-15■□□□□ 10.3
DDX55Q8NHQ9 RPS3-212ENST00000529173 1373 ntTSL 514.61□□□□□ -0.071e-15■□□□□ 10.3
DDX55Q8NHQ9 RPS3-217ENST00000531188 2097 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.211e-15■□□□□ 10.3
DDX55Q8NHQ9 RPS3-205ENST00000525933 1307 ntTSL 513.37□□□□□ -0.271e-15■□□□□ 10.3
DDX55Q8NHQ9 RPS3-211ENST00000528847 639 ntTSL 512.96□□□□□ -0.331e-15■□□□□ 10.3
DDX55Q8NHQ9 RPS3-203ENST00000524851 866 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.481e-15■□□□□ 10.3
DDX55Q8NHQ9 RPS3-204ENST00000525690 421 ntTSL 311.62□□□□□ -0.551e-15■□□□□ 10.3
DDX55Q8NHQ9 RPS3-210ENST00000528439 473 ntTSL 311.62□□□□□ -0.551e-15■□□□□ 10.3
DDX55Q8NHQ9 RPS3-219ENST00000534440 564 ntTSL 2 BASIC11.62□□□□□ -0.551e-15■□□□□ 10.3
DDX55Q8NHQ9 RPS3-202ENST00000422465 903 ntTSL 211.49□□□□□ -0.571e-15■□□□□ 10.3
DDX55Q8NHQ9 RPS3-207ENST00000526608 710 ntTSL 5 BASIC11.42□□□□□ -0.581e-15■□□□□ 10.3
DDX55Q8NHQ9 RPS3-215ENST00000530170 531 ntTSL 59.79□□□□□ -0.841e-15■□□□□ 10.3
DDX55Q8NHQ9 RPS21-205ENST00000492356 429 ntTSL 1 (best)15.07■□□□□ 01e-17■□□□□ 10.3
DDX55Q8NHQ9 RPS21-202ENST00000370562 1002 ntTSL 2 BASIC15.06■□□□□ 01e-17■□□□□ 10.3
DDX55Q8NHQ9 RPS21-203ENST00000370592 401 ntTSL 214.9□□□□□ -0.021e-17■□□□□ 10.3
DDX55Q8NHQ9 RPS21-204ENST00000450116 418 ntAPPRIS ALT1 TSL 1 (best) BASIC13.82□□□□□ -0.21e-17■□□□□ 10.3
DDX55Q8NHQ9 RPS21-201ENST00000343986 344 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.521e-17■□□□□ 10.3
DDX55Q8NHQ9 MBNL3-206ENST00000394311 11263 ntTSL 2 BASIC6.96□□□□□ -1.31e-25■□□□□ 10.3
DDX55Q8NHQ9 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.33□□□□□ -1.881e-25■□□□□ 10.3
DDX55Q8NHQ9 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.86□□□□□ -2.111e-25■□□□□ 10.3
DDX55Q8NHQ9 TMEM141-205ENST00000484854 567 ntTSL 330.94■■■□□ 2.547e-8■□□□□ 10.3
DDX55Q8NHQ9 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC27.52■■■□□ 27e-8■□□□□ 10.3
DDX55Q8NHQ9 TMEM141-203ENST00000479737 491 ntTSL 220.85■□□□□ 0.937e-8■□□□□ 10.3
DDX55Q8NHQ9 TMEM141-202ENST00000465017 839 ntTSL 218.83■□□□□ 0.67e-8■□□□□ 10.3
DDX55Q8NHQ9 TMEM141-204ENST00000483187 683 ntTSL 218.83■□□□□ 0.67e-8■□□□□ 10.3
DDX55Q8NHQ9 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.487e-8■□□□□ 10.3
DDX55Q8NHQ9 TMEM141-206ENST00000489739 551 ntTSL 315.3■□□□□ 0.047e-8■□□□□ 10.3
DDX55Q8NHQ9 CDH2-202ENST00000399380 3737 ntTSL 2 BASIC8.01□□□□□ -1.136e-7■□□□□ 10.3
DDX55Q8NHQ9 C14orf2-210ENST00000555030 749 ntTSL 3 BASIC12.53□□□□□ -0.41e-7■□□□□ 10.3
DDX55Q8NHQ9 C14orf2-202ENST00000414262 842 ntTSL 1 (best) BASIC10.61□□□□□ -0.711e-7■□□□□ 10.3
DDX55Q8NHQ9 C14orf2-201ENST00000286953 643 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.751e-7■□□□□ 10.3
DDX55Q8NHQ9 C14orf2-204ENST00000553449 271 ntTSL 29.97□□□□□ -0.811e-7■□□□□ 10.3
DDX55Q8NHQ9 C14orf2-203ENST00000553430 1659 ntTSL 1 (best) BASIC9.94□□□□□ -0.821e-7■□□□□ 10.3
DDX55Q8NHQ9 C14orf2-209ENST00000554880 707 ntAPPRIS P1 TSL 3 BASIC8.85□□□□□ -0.991e-7■□□□□ 10.3
DDX55Q8NHQ9 C14orf2-211ENST00000557040 472 ntAPPRIS P1 TSL 3 BASIC6.55□□□□□ -1.361e-7■□□□□ 10.3
DDX55Q8NHQ9 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC21.23■□□□□ 0.995e-14■□□□□ 10.3
DDX55Q8NHQ9 SLC47A1-205ENST00000497548 1900 ntTSL 220.25■□□□□ 0.835e-14■□□□□ 10.3
DDX55Q8NHQ9 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC18.45■□□□□ 0.545e-14■□□□□ 10.3
DDX55Q8NHQ9 SLC47A1-201ENST00000270570 3280 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.265e-14■□□□□ 10.3
DDX55Q8NHQ9 SLC47A1-213ENST00000581558 414 ntTSL 36.41□□□□□ -1.385e-14■□□□□ 10.3
DDX55Q8NHQ9 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC29.71■■■□□ 2.353e-8■□□□□ 10.3
DDX55Q8NHQ9 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC26.05■■□□□ 1.763e-8■□□□□ 10.3
DDX55Q8NHQ9 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC25.14■■□□□ 1.623e-8■□□□□ 10.3
DDX55Q8NHQ9 IFNGR2-204ENST00000421802 727 ntTSL 315.46■□□□□ 0.073e-8■□□□□ 10.3
DDX55Q8NHQ9 RPS4Y1-202ENST00000430575 811 ntTSL 37.19□□□□□ -1.266e-8■□□□□ 10.3
DDX55Q8NHQ9 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.586e-8■□□□□ 10.3
DDX55Q8NHQ9 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC21.96■■□□□ 1.112e-8■□□□□ 10.3
DDX55Q8NHQ9 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.762e-8■□□□□ 10.3
DDX55Q8NHQ9 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC19.82■□□□□ 0.762e-8■□□□□ 10.3
DDX55Q8NHQ9 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.762e-8■□□□□ 10.3
DDX55Q8NHQ9 DIAPH1-205ENST00000448451 2102 ntTSL 214.84□□□□□ -0.032e-8■□□□□ 10.3
DDX55Q8NHQ9 DIAPH1-208ENST00000476339 2606 ntTSL 213.09□□□□□ -0.312e-8■□□□□ 10.3
DDX55Q8NHQ9 DIAPH1-211ENST00000518047 4668 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.632e-8■□□□□ 10.3
DDX55Q8NHQ9 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC24.51■■□□□ 1.519e-8■□□□□ 10.3
DDX55Q8NHQ9 NECTIN2-205ENST00000591581 950 ntTSL 216.77■□□□□ 0.289e-8■□□□□ 10.3
DDX55Q8NHQ9 NECTIN2-201ENST00000252483 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.059e-8■□□□□ 10.3
DDX55Q8NHQ9 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.361e-11■□□□□ 10.3
DDX55Q8NHQ9 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.311e-11■□□□□ 10.3
DDX55Q8NHQ9 NACA-201ENST00000356769 2690 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.361e-11■□□□□ 10.3
DDX55Q8NHQ9 NACA-215ENST00000550920 752 ntTSL 512.62□□□□□ -0.391e-11■□□□□ 10.3
DDX55Q8NHQ9 NACA-204ENST00000546392 802 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.521e-11■□□□□ 10.3
DDX55Q8NHQ9 NACA-208ENST00000547914 543 ntTSL 59.68□□□□□ -0.861e-11■□□□□ 10.3
DDX55Q8NHQ9 NACA-216ENST00000550952 2922 ntTSL 2 BASIC8.38□□□□□ -1.071e-11■□□□□ 10.3
DDX55Q8NHQ9 NACA-203ENST00000454682 6629 ntTSL 5 BASIC7.43□□□□□ -1.221e-11■□□□□ 10.3
DDX55Q8NHQ9 NACA-210ENST00000548386 644 ntTSL 25.33□□□□□ -1.561e-11■□□□□ 10.3
DDX55Q8NHQ9 NACA-211ENST00000548563 827 ntTSL 5 BASIC4.33□□□□□ -1.721e-11■□□□□ 10.3
DDX55Q8NHQ9 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC19.33■□□□□ 0.697e-8■□□□□ 10.2
DDX55Q8NHQ9 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC18.59■□□□□ 0.577e-8■□□□□ 10.2
DDX55Q8NHQ9 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.427e-8■□□□□ 10.2
DDX55Q8NHQ9 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.117e-8■□□□□ 10.2
DDX55Q8NHQ9 TBRG4-217ENST00000495973 3409 ntTSL 1 (best)12.03□□□□□ -0.487e-8■□□□□ 10.2
DDX55Q8NHQ9 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC6.54□□□□□ -1.367e-10■□□□□ 10.2
DDX55Q8NHQ9 C4orf3-201ENST00000399075 2960 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.492e-31■□□□□ 10.2
DDX55Q8NHQ9 EIF3G-207ENST00000589009 1522 ntTSL 218.77■□□□□ 0.62e-7■□□□□ 10.2
DDX55Q8NHQ9 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.52e-7■□□□□ 10.2
Retrieved 100 of 15,504 protein–RNA pairs in 121.5 ms