Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 TSPY7P-201ENST00000431358 1114 ntBASIC17.04■□□□□ 0.32
DEPDC4Q8N2C3 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
DEPDC4Q8N2C3 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC17.04■□□□□ 0.32
DEPDC4Q8N2C3 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC17.04■□□□□ 0.32
DEPDC4Q8N2C3 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC17.04■□□□□ 0.32
DEPDC4Q8N2C3 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC17.04■□□□□ 0.32
DEPDC4Q8N2C3 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
DEPDC4Q8N2C3 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
DEPDC4Q8N2C3 REXO2-216ENST00000544196 452 ntTSL 3 BASIC17.04■□□□□ 0.32
DEPDC4Q8N2C3 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC17.04■□□□□ 0.32
DEPDC4Q8N2C3 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
DEPDC4Q8N2C3 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
DEPDC4Q8N2C3 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC17.04■□□□□ 0.32
DEPDC4Q8N2C3 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC17.04■□□□□ 0.32
DEPDC4Q8N2C3 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
DEPDC4Q8N2C3 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC17.04■□□□□ 0.32
DEPDC4Q8N2C3 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
DEPDC4Q8N2C3 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
DEPDC4Q8N2C3 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC17.04■□□□□ 0.32
DEPDC4Q8N2C3 MTMR9LP-203ENST00000426597 1545 ntBASIC17.04■□□□□ 0.32
DEPDC4Q8N2C3 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
DEPDC4Q8N2C3 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
DEPDC4Q8N2C3 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
DEPDC4Q8N2C3 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
DEPDC4Q8N2C3 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
DEPDC4Q8N2C3 NFYC-AS1-201ENST00000606277 1687 ntBASIC17.04■□□□□ 0.32
DEPDC4Q8N2C3 AL499627.1-201ENST00000569373 2188 ntBASIC17.04■□□□□ 0.32
DEPDC4Q8N2C3 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC17.03■□□□□ 0.32
DEPDC4Q8N2C3 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
DEPDC4Q8N2C3 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
DEPDC4Q8N2C3 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
DEPDC4Q8N2C3 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
DEPDC4Q8N2C3 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
DEPDC4Q8N2C3 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
DEPDC4Q8N2C3 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
DEPDC4Q8N2C3 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
DEPDC4Q8N2C3 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC17.03■□□□□ 0.32
DEPDC4Q8N2C3 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
DEPDC4Q8N2C3 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
DEPDC4Q8N2C3 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
DEPDC4Q8N2C3 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
DEPDC4Q8N2C3 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
DEPDC4Q8N2C3 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
DEPDC4Q8N2C3 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
DEPDC4Q8N2C3 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
DEPDC4Q8N2C3 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
DEPDC4Q8N2C3 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
DEPDC4Q8N2C3 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC17.03■□□□□ 0.32
DEPDC4Q8N2C3 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC17.03■□□□□ 0.32
DEPDC4Q8N2C3 AC113410.3-201ENST00000623366 203 ntBASIC17.03■□□□□ 0.32
DEPDC4Q8N2C3 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
DEPDC4Q8N2C3 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
DEPDC4Q8N2C3 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC17.03■□□□□ 0.32
DEPDC4Q8N2C3 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.03■□□□□ 0.32
DEPDC4Q8N2C3 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC17.03■□□□□ 0.32
DEPDC4Q8N2C3 AC093677.2-201ENST00000600169 1863 ntBASIC17.03■□□□□ 0.32
DEPDC4Q8N2C3 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC17.03■□□□□ 0.32
DEPDC4Q8N2C3 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
DEPDC4Q8N2C3 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC17.02■□□□□ 0.32
DEPDC4Q8N2C3 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
DEPDC4Q8N2C3 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
DEPDC4Q8N2C3 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
DEPDC4Q8N2C3 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
DEPDC4Q8N2C3 GNE-204ENST00000539208 2190 ntTSL 2 BASIC17.02■□□□□ 0.32
DEPDC4Q8N2C3 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
DEPDC4Q8N2C3 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC17.02■□□□□ 0.32
DEPDC4Q8N2C3 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
DEPDC4Q8N2C3 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC17.02■□□□□ 0.32
DEPDC4Q8N2C3 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
DEPDC4Q8N2C3 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC17.02■□□□□ 0.32
DEPDC4Q8N2C3 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
DEPDC4Q8N2C3 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
DEPDC4Q8N2C3 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
DEPDC4Q8N2C3 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
DEPDC4Q8N2C3 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC17.02■□□□□ 0.32
DEPDC4Q8N2C3 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
DEPDC4Q8N2C3 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
DEPDC4Q8N2C3 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
DEPDC4Q8N2C3 SAPCD2P4-201ENST00000424595 1171 ntBASIC17.02■□□□□ 0.32
DEPDC4Q8N2C3 PENK-204ENST00000518770 863 ntTSL 2 BASIC17.02■□□□□ 0.32
DEPDC4Q8N2C3 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC17.02■□□□□ 0.32
DEPDC4Q8N2C3 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC17.02■□□□□ 0.32
DEPDC4Q8N2C3 AL160286.2-201ENST00000567150 934 ntBASIC17.02■□□□□ 0.32
DEPDC4Q8N2C3 LINC00511-205ENST00000578206 908 ntTSL 3 BASIC17.02■□□□□ 0.32
DEPDC4Q8N2C3 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC17.02■□□□□ 0.32
DEPDC4Q8N2C3 CD177P1-201ENST00000606252 935 ntBASIC17.02■□□□□ 0.32
DEPDC4Q8N2C3 AC073912.3-201ENST00000624414 853 ntBASIC17.02■□□□□ 0.32
DEPDC4Q8N2C3 AC068587.9-201ENST00000641814 219 ntBASIC17.02■□□□□ 0.32
DEPDC4Q8N2C3 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC17.02■□□□□ 0.32
DEPDC4Q8N2C3 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC17.02■□□□□ 0.32
DEPDC4Q8N2C3 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
DEPDC4Q8N2C3 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
DEPDC4Q8N2C3 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
DEPDC4Q8N2C3 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
DEPDC4Q8N2C3 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
DEPDC4Q8N2C3 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.31
DEPDC4Q8N2C3 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
DEPDC4Q8N2C3 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
DEPDC4Q8N2C3 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC17.01■□□□□ 0.31
DEPDC4Q8N2C3 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms