Protein–RNA interactions for Protein: Q7M4L6

SHF, SH2 domain-containing adapter protein F, humanhuman

Predictions only

Length 423 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHFQ7M4L6 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SHFQ7M4L6 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC16.55■□□□□ 0.24
SHFQ7M4L6 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC16.55■□□□□ 0.24
SHFQ7M4L6 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
SHFQ7M4L6 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC16.55■□□□□ 0.24
SHFQ7M4L6 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
SHFQ7M4L6 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SHFQ7M4L6 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
SHFQ7M4L6 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SHFQ7M4L6 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SHFQ7M4L6 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SHFQ7M4L6 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SHFQ7M4L6 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC16.55■□□□□ 0.24
SHFQ7M4L6 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC16.55■□□□□ 0.24
SHFQ7M4L6 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC16.55■□□□□ 0.24
SHFQ7M4L6 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
SHFQ7M4L6 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SHFQ7M4L6 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC16.55■□□□□ 0.24
SHFQ7M4L6 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC16.55■□□□□ 0.24
SHFQ7M4L6 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
SHFQ7M4L6 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC16.55■□□□□ 0.24
SHFQ7M4L6 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC16.55■□□□□ 0.24
SHFQ7M4L6 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SHFQ7M4L6 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC16.55■□□□□ 0.24
SHFQ7M4L6 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SHFQ7M4L6 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SHFQ7M4L6 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC16.54■□□□□ 0.24
SHFQ7M4L6 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC16.54■□□□□ 0.24
SHFQ7M4L6 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SHFQ7M4L6 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SHFQ7M4L6 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SHFQ7M4L6 AC012317.2-201ENST00000623305 2251 ntBASIC16.54■□□□□ 0.24
SHFQ7M4L6 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
SHFQ7M4L6 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
SHFQ7M4L6 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC16.54■□□□□ 0.24
SHFQ7M4L6 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC16.54■□□□□ 0.24
SHFQ7M4L6 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
SHFQ7M4L6 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SHFQ7M4L6 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SHFQ7M4L6 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC16.54■□□□□ 0.24
SHFQ7M4L6 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SHFQ7M4L6 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SHFQ7M4L6 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
SHFQ7M4L6 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SHFQ7M4L6 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SHFQ7M4L6 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
SHFQ7M4L6 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
SHFQ7M4L6 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SHFQ7M4L6 AC128676.1-201ENST00000454392 318 ntBASIC16.54■□□□□ 0.24
SHFQ7M4L6 C1QBPP2-201ENST00000528754 825 ntBASIC16.54■□□□□ 0.24
SHFQ7M4L6 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC16.54■□□□□ 0.24
SHFQ7M4L6 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SHFQ7M4L6 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC16.54■□□□□ 0.24
SHFQ7M4L6 AC011298.2-201ENST00000617989 482 ntBASIC16.54■□□□□ 0.24
SHFQ7M4L6 CR392000.1-201ENST00000624770 1228 ntBASIC16.54■□□□□ 0.24
SHFQ7M4L6 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
SHFQ7M4L6 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
SHFQ7M4L6 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SHFQ7M4L6 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC16.54■□□□□ 0.24
SHFQ7M4L6 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
SHFQ7M4L6 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SHFQ7M4L6 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC16.53■□□□□ 0.24
SHFQ7M4L6 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SHFQ7M4L6 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC16.53■□□□□ 0.24
SHFQ7M4L6 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SHFQ7M4L6 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SHFQ7M4L6 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHFQ7M4L6 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHFQ7M4L6 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHFQ7M4L6 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHFQ7M4L6 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHFQ7M4L6 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SHFQ7M4L6 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC16.53■□□□□ 0.24
SHFQ7M4L6 CKBP1-201ENST00000565489 1086 ntBASIC16.53■□□□□ 0.24
SHFQ7M4L6 AC073195.1-201ENST00000607241 877 ntBASIC16.53■□□□□ 0.24
SHFQ7M4L6 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHFQ7M4L6 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHFQ7M4L6 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHFQ7M4L6 STK4-201ENST00000372801 2038 ntTSL 2 BASIC16.53■□□□□ 0.24
SHFQ7M4L6 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SHFQ7M4L6 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC16.53■□□□□ 0.24
SHFQ7M4L6 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC16.53■□□□□ 0.24
SHFQ7M4L6 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHFQ7M4L6 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC16.53■□□□□ 0.24
SHFQ7M4L6 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC16.53■□□□□ 0.24
SHFQ7M4L6 AL096828.2-201ENST00000567259 1965 ntBASIC16.53■□□□□ 0.24
SHFQ7M4L6 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC16.53■□□□□ 0.24
SHFQ7M4L6 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHFQ7M4L6 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
SHFQ7M4L6 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SHFQ7M4L6 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC16.52■□□□□ 0.24
SHFQ7M4L6 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC16.52■□□□□ 0.24
SHFQ7M4L6 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC16.52■□□□□ 0.24
SHFQ7M4L6 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SHFQ7M4L6 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SHFQ7M4L6 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SHFQ7M4L6 AL645608.8-201ENST00000606034 2086 ntBASIC16.52■□□□□ 0.24
SHFQ7M4L6 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SHFQ7M4L6 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SHFQ7M4L6 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms