Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC13.75□□□□□ -0.21
FOXA3P55318 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA3P55318 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
FOXA3P55318 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA3P55318 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC13.75□□□□□ -0.21
FOXA3P55318 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA3P55318 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA3P55318 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA3P55318 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA3P55318 HSCB-202ENST00000398941 955 ntTSL 2 BASIC13.75□□□□□ -0.21
FOXA3P55318 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
FOXA3P55318 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC13.75□□□□□ -0.21
FOXA3P55318 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA3P55318 AC137761.2-201ENST00000561729 223 ntBASIC13.75□□□□□ -0.21
FOXA3P55318 AC145350.3-201ENST00000569033 163 ntBASIC13.75□□□□□ -0.21
FOXA3P55318 MNT-208ENST00000575394 606 ntTSL 4 BASIC13.75□□□□□ -0.21
FOXA3P55318 WWOX-218ENST00000627394 894 ntTSL 5 BASIC13.75□□□□□ -0.21
FOXA3P55318 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC13.75□□□□□ -0.21
FOXA3P55318 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
FOXA3P55318 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA3P55318 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA3P55318 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
FOXA3P55318 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA3P55318 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
FOXA3P55318 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC13.75□□□□□ -0.21
FOXA3P55318 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC13.74□□□□□ -0.21
FOXA3P55318 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC13.74□□□□□ -0.21
FOXA3P55318 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC13.74□□□□□ -0.21
FOXA3P55318 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC13.74□□□□□ -0.21
FOXA3P55318 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA3P55318 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA3P55318 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
FOXA3P55318 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA3P55318 HARS-201ENST00000307633 1780 ntTSL 2 BASIC13.74□□□□□ -0.21
FOXA3P55318 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC13.74□□□□□ -0.21
FOXA3P55318 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA3P55318 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA3P55318 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA3P55318 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC13.74□□□□□ -0.21
FOXA3P55318 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA3P55318 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA3P55318 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA3P55318 AC005181.1-201ENST00000604782 1256 ntBASIC13.74□□□□□ -0.21
FOXA3P55318 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA3P55318 BANP-227ENST00000626016 2144 ntTSL 2 BASIC13.74□□□□□ -0.21
FOXA3P55318 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA3P55318 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA3P55318 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA3P55318 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC13.74□□□□□ -0.21
FOXA3P55318 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA3P55318 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA3P55318 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC13.74□□□□□ -0.21
FOXA3P55318 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC13.74□□□□□ -0.21
FOXA3P55318 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA3P55318 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
FOXA3P55318 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
FOXA3P55318 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA3P55318 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
FOXA3P55318 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA3P55318 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
FOXA3P55318 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA3P55318 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA3P55318 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA3P55318 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA3P55318 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA3P55318 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC13.73□□□□□ -0.21
FOXA3P55318 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA3P55318 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC13.73□□□□□ -0.21
FOXA3P55318 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA3P55318 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA3P55318 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA3P55318 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA3P55318 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA3P55318 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA3P55318 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC13.73□□□□□ -0.21
FOXA3P55318 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC13.73□□□□□ -0.21
FOXA3P55318 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC13.73□□□□□ -0.21
FOXA3P55318 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC13.73□□□□□ -0.21
FOXA3P55318 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
FOXA3P55318 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC13.73□□□□□ -0.21
FOXA3P55318 AC231657.2-201ENST00000624556 255 ntBASIC13.73□□□□□ -0.21
FOXA3P55318 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC13.73□□□□□ -0.21
FOXA3P55318 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC13.73□□□□□ -0.21
FOXA3P55318 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA3P55318 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC13.73□□□□□ -0.21
FOXA3P55318 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA3P55318 AC006116.8-202ENST00000587620 1550 ntBASIC13.73□□□□□ -0.21
FOXA3P55318 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA3P55318 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC13.73□□□□□ -0.21
FOXA3P55318 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA3P55318 AL357033.4-201ENST00000617703 1807 ntBASIC13.73□□□□□ -0.21
FOXA3P55318 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA3P55318 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
FOXA3P55318 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC13.73□□□□□ -0.21
FOXA3P55318 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC13.73□□□□□ -0.21
FOXA3P55318 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC13.73□□□□□ -0.21
FOXA3P55318 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC13.73□□□□□ -0.21
FOXA3P55318 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC13.73□□□□□ -0.21
FOXA3P55318 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC13.73□□□□□ -0.21
FOXA3P55318 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC13.73□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 9.7 ms