Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CDH6P55285 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDH6P55285 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDH6P55285 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC19.04■□□□□ 0.64
CDH6P55285 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDH6P55285 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDH6P55285 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDH6P55285 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDH6P55285 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC19.04■□□□□ 0.64
CDH6P55285 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC19.04■□□□□ 0.64
CDH6P55285 GAD2-202ENST00000376248 680 ntTSL 5 BASIC19.04■□□□□ 0.64
CDH6P55285 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CDH6P55285 SEC1P-202ENST00000473944 940 ntBASIC19.04■□□□□ 0.64
CDH6P55285 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC19.04■□□□□ 0.64
CDH6P55285 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDH6P55285 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC19.04■□□□□ 0.64
CDH6P55285 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC19.04■□□□□ 0.64
CDH6P55285 MIR3180-4-201ENST00000582223 153 ntBASIC19.04■□□□□ 0.64
CDH6P55285 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CDH6P55285 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC19.04■□□□□ 0.64
CDH6P55285 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
CDH6P55285 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC19.04■□□□□ 0.64
CDH6P55285 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDH6P55285 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CDH6P55285 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC19.04■□□□□ 0.64
CDH6P55285 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDH6P55285 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CDH6P55285 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDH6P55285 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CDH6P55285 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CDH6P55285 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CDH6P55285 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
CDH6P55285 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CDH6P55285 PHGDH-209ENST00000641074 1780 ntBASIC19.04■□□□□ 0.64
CDH6P55285 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CDH6P55285 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC19.03■□□□□ 0.64
CDH6P55285 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
CDH6P55285 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CDH6P55285 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
CDH6P55285 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC19.03■□□□□ 0.64
CDH6P55285 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC19.03■□□□□ 0.64
CDH6P55285 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CDH6P55285 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CDH6P55285 ECEL1P3-201ENST00000427961 737 ntBASIC19.03■□□□□ 0.64
CDH6P55285 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
CDH6P55285 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CDH6P55285 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC19.03■□□□□ 0.64
CDH6P55285 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC19.03■□□□□ 0.64
CDH6P55285 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC19.03■□□□□ 0.64
CDH6P55285 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC19.03■□□□□ 0.64
CDH6P55285 DUT-205ENST00000558813 769 ntTSL 2 BASIC19.03■□□□□ 0.64
CDH6P55285 NEK4P2-201ENST00000580004 1012 ntBASIC19.03■□□□□ 0.64
CDH6P55285 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC19.03■□□□□ 0.64
CDH6P55285 AC012306.2-201ENST00000609350 630 ntBASIC19.03■□□□□ 0.64
CDH6P55285 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC19.03■□□□□ 0.64
CDH6P55285 AC097493.4-201ENST00000641197 219 ntBASIC19.03■□□□□ 0.64
CDH6P55285 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC19.03■□□□□ 0.64
CDH6P55285 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
CDH6P55285 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CDH6P55285 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CDH6P55285 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
CDH6P55285 AL096828.2-201ENST00000567259 1965 ntBASIC19.02■□□□□ 0.64
CDH6P55285 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC19.02■□□□□ 0.64
CDH6P55285 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
CDH6P55285 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
CDH6P55285 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
CDH6P55285 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CDH6P55285 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
CDH6P55285 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CDH6P55285 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CDH6P55285 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CDH6P55285 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CDH6P55285 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC19.02■□□□□ 0.64
CDH6P55285 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CDH6P55285 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CDH6P55285 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CDH6P55285 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC19.02■□□□□ 0.64
CDH6P55285 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CDH6P55285 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC19.02■□□□□ 0.64
CDH6P55285 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
CDH6P55285 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
CDH6P55285 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC19.02■□□□□ 0.64
CDH6P55285 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CDH6P55285 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
CDH6P55285 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
CDH6P55285 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
CDH6P55285 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
CDH6P55285 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
CDH6P55285 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC19.02■□□□□ 0.63
CDH6P55285 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.63
CDH6P55285 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC19.02■□□□□ 0.63
CDH6P55285 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC19.02■□□□□ 0.63
CDH6P55285 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CDH6P55285 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CDH6P55285 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
CDH6P55285 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CDH6P55285 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
CDH6P55285 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
CDH6P55285 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC19.01■□□□□ 0.63
CDH6P55285 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms