Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LIG3P49916 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIG3P49916 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIG3P49916 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIG3P49916 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIG3P49916 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC19.22■□□□□ 0.67
LIG3P49916 AC093525.10-201ENST00000625130 1569 ntBASIC19.22■□□□□ 0.67
LIG3P49916 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
LIG3P49916 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIG3P49916 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIG3P49916 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIG3P49916 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
LIG3P49916 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIG3P49916 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIG3P49916 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC19.21■□□□□ 0.67
LIG3P49916 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC19.21■□□□□ 0.67
LIG3P49916 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC19.21■□□□□ 0.67
LIG3P49916 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
LIG3P49916 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIG3P49916 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIG3P49916 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIG3P49916 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
LIG3P49916 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
LIG3P49916 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIG3P49916 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIG3P49916 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
LIG3P49916 MFAP1P1-201ENST00000442257 1255 ntBASIC19.21■□□□□ 0.67
LIG3P49916 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
LIG3P49916 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
LIG3P49916 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC19.21■□□□□ 0.67
LIG3P49916 CYGB-204ENST00000589342 815 ntTSL 3 BASIC19.21■□□□□ 0.67
LIG3P49916 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC19.21■□□□□ 0.67
LIG3P49916 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC19.21■□□□□ 0.67
LIG3P49916 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
LIG3P49916 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
LIG3P49916 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIG3P49916 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
LIG3P49916 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIG3P49916 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC19.21■□□□□ 0.67
LIG3P49916 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC19.21■□□□□ 0.67
LIG3P49916 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIG3P49916 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIG3P49916 AC126763.1-201ENST00000552015 2118 ntBASIC19.21■□□□□ 0.67
LIG3P49916 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIG3P49916 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.66
LIG3P49916 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIG3P49916 AC096733.2-201ENST00000609937 1394 ntBASIC19.2■□□□□ 0.66
LIG3P49916 LINC01568-207ENST00000641790 1380 ntBASIC19.2■□□□□ 0.66
LIG3P49916 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
LIG3P49916 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC19.2■□□□□ 0.66
LIG3P49916 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIG3P49916 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
LIG3P49916 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIG3P49916 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC19.2■□□□□ 0.66
LIG3P49916 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC19.2■□□□□ 0.66
LIG3P49916 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC19.2■□□□□ 0.66
LIG3P49916 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC19.2■□□□□ 0.66
LIG3P49916 AC145285.6-201ENST00000604632 637 ntBASIC19.2■□□□□ 0.66
LIG3P49916 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIG3P49916 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC19.2■□□□□ 0.66
LIG3P49916 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
LIG3P49916 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIG3P49916 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
LIG3P49916 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
LIG3P49916 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC19.2■□□□□ 0.66
LIG3P49916 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIG3P49916 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
LIG3P49916 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC19.2■□□□□ 0.66
LIG3P49916 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIG3P49916 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIG3P49916 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC19.2■□□□□ 0.66
LIG3P49916 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIG3P49916 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIG3P49916 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC19.2■□□□□ 0.66
LIG3P49916 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIG3P49916 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIG3P49916 AC018695.7-201ENST00000624587 2492 ntBASIC19.19■□□□□ 0.66
LIG3P49916 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC19.19■□□□□ 0.66
LIG3P49916 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC19.19■□□□□ 0.66
LIG3P49916 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC19.19■□□□□ 0.66
LIG3P49916 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
LIG3P49916 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LIG3P49916 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC19.19■□□□□ 0.66
LIG3P49916 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC19.19■□□□□ 0.66
LIG3P49916 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
LIG3P49916 SDHAP1-207ENST00000440850 2000 ntBASIC19.19■□□□□ 0.66
LIG3P49916 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIG3P49916 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIG3P49916 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIG3P49916 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC19.19■□□□□ 0.66
LIG3P49916 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC19.19■□□□□ 0.66
LIG3P49916 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIG3P49916 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC19.19■□□□□ 0.66
LIG3P49916 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC19.19■□□□□ 0.66
LIG3P49916 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC19.19■□□□□ 0.66
LIG3P49916 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
LIG3P49916 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIG3P49916 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIG3P49916 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
LIG3P49916 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms