Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL5A1P20908 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC17.48■□□□□ 0.39
COL5A1P20908 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC17.48■□□□□ 0.39
COL5A1P20908 HLA-J-201ENST00000462773 1622 ntBASIC17.48■□□□□ 0.39
COL5A1P20908 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC17.48■□□□□ 0.39
COL5A1P20908 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC17.48■□□□□ 0.39
COL5A1P20908 YBX2P1-201ENST00000394192 760 ntBASIC17.48■□□□□ 0.39
COL5A1P20908 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC17.48■□□□□ 0.39
COL5A1P20908 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC17.48■□□□□ 0.39
COL5A1P20908 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC17.48■□□□□ 0.39
COL5A1P20908 AC040169.1-201ENST00000565382 521 ntBASIC17.48■□□□□ 0.39
COL5A1P20908 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC17.48■□□□□ 0.39
COL5A1P20908 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC17.48■□□□□ 0.39
COL5A1P20908 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL5A1P20908 AC025062.2-201ENST00000605477 670 ntBASIC17.48■□□□□ 0.39
COL5A1P20908 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL5A1P20908 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL5A1P20908 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL5A1P20908 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL5A1P20908 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
COL5A1P20908 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
COL5A1P20908 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC17.48■□□□□ 0.39
COL5A1P20908 AC104109.2-201ENST00000602919 1418 ntBASIC17.48■□□□□ 0.39
COL5A1P20908 AL356309.3-201ENST00000624132 1934 ntBASIC17.48■□□□□ 0.39
COL5A1P20908 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC17.48■□□□□ 0.39
COL5A1P20908 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC17.48■□□□□ 0.39
COL5A1P20908 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
COL5A1P20908 SDHAP2-201ENST00000455183 2001 ntBASIC17.48■□□□□ 0.39
COL5A1P20908 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC17.48■□□□□ 0.39
COL5A1P20908 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL5A1P20908 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL5A1P20908 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL5A1P20908 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL5A1P20908 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC17.47■□□□□ 0.39
COL5A1P20908 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL5A1P20908 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL5A1P20908 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL5A1P20908 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL5A1P20908 KIRREL3-AS3-201ENST00000404882 831 ntBASIC17.47■□□□□ 0.39
COL5A1P20908 PMS2P2-201ENST00000425039 1128 ntBASIC17.47■□□□□ 0.39
COL5A1P20908 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC17.47■□□□□ 0.39
COL5A1P20908 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC17.47■□□□□ 0.39
COL5A1P20908 RNA5SP415-201ENST00000517246 115 ntBASIC17.47■□□□□ 0.39
COL5A1P20908 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC17.47■□□□□ 0.39
COL5A1P20908 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC17.47■□□□□ 0.39
COL5A1P20908 RPS29-206ENST00000557111 488 ntTSL 2 BASIC17.47■□□□□ 0.39
COL5A1P20908 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC17.47■□□□□ 0.39
COL5A1P20908 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC17.47■□□□□ 0.39
COL5A1P20908 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC17.47■□□□□ 0.39
COL5A1P20908 AC055717.3-201ENST00000622967 595 ntBASIC17.47■□□□□ 0.39
COL5A1P20908 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC17.47■□□□□ 0.39
COL5A1P20908 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC17.47■□□□□ 0.39
COL5A1P20908 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC17.47■□□□□ 0.39
COL5A1P20908 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC17.47■□□□□ 0.39
COL5A1P20908 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL5A1P20908 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL5A1P20908 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
COL5A1P20908 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
COL5A1P20908 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL5A1P20908 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC17.47■□□□□ 0.39
COL5A1P20908 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
COL5A1P20908 AC004832.2-201ENST00000426397 482 ntBASIC17.47■□□□□ 0.39
COL5A1P20908 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC17.47■□□□□ 0.39
COL5A1P20908 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC17.47■□□□□ 0.39
COL5A1P20908 AC092910.1-201ENST00000482027 1129 ntBASIC17.47■□□□□ 0.39
COL5A1P20908 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
COL5A1P20908 AL356488.2-201ENST00000602755 427 ntBASIC17.47■□□□□ 0.39
COL5A1P20908 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
COL5A1P20908 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
COL5A1P20908 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC17.47■□□□□ 0.39
COL5A1P20908 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL5A1P20908 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC17.46■□□□□ 0.39
COL5A1P20908 USP39-202ENST00000409025 1946 ntTSL 5 BASIC17.46■□□□□ 0.39
COL5A1P20908 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC17.46■□□□□ 0.39
COL5A1P20908 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
COL5A1P20908 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL5A1P20908 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC17.46■□□□□ 0.39
COL5A1P20908 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL5A1P20908 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL5A1P20908 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL5A1P20908 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC17.46■□□□□ 0.39
COL5A1P20908 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL5A1P20908 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL5A1P20908 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL5A1P20908 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC17.46■□□□□ 0.39
COL5A1P20908 KRT18P65-201ENST00000439811 1286 ntBASIC17.46■□□□□ 0.39
COL5A1P20908 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL5A1P20908 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC17.46■□□□□ 0.39
COL5A1P20908 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL5A1P20908 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
COL5A1P20908 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
COL5A1P20908 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
COL5A1P20908 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL5A1P20908 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL5A1P20908 ANO7L1-203ENST00000602586 1720 ntBASIC17.45■□□□□ 0.38
COL5A1P20908 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC17.45■□□□□ 0.38
COL5A1P20908 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL5A1P20908 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
COL5A1P20908 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
COL5A1P20908 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 68.6 ms