Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 FLJ13224-201ENST00000313737 1514 ntBASIC17.71■□□□□ 0.43
CLDN9O95484 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CLDN9O95484 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLDN9O95484 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
CLDN9O95484 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC17.71■□□□□ 0.43
CLDN9O95484 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC17.71■□□□□ 0.43
CLDN9O95484 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC17.71■□□□□ 0.42
CLDN9O95484 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
CLDN9O95484 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC17.71■□□□□ 0.42
CLDN9O95484 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
CLDN9O95484 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLDN9O95484 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CLDN9O95484 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CLDN9O95484 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CLDN9O95484 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC17.7■□□□□ 0.42
CLDN9O95484 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLDN9O95484 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLDN9O95484 AC005332.8-201ENST00000622750 2735 ntBASIC17.7■□□□□ 0.42
CLDN9O95484 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CLDN9O95484 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLDN9O95484 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC17.7■□□□□ 0.42
CLDN9O95484 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC17.7■□□□□ 0.42
CLDN9O95484 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC17.7■□□□□ 0.42
CLDN9O95484 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CLDN9O95484 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
CLDN9O95484 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLDN9O95484 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CLDN9O95484 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLDN9O95484 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLDN9O95484 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC17.7■□□□□ 0.42
CLDN9O95484 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CLDN9O95484 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC17.7■□□□□ 0.42
CLDN9O95484 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
CLDN9O95484 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLDN9O95484 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLDN9O95484 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC17.69■□□□□ 0.42
CLDN9O95484 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLDN9O95484 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLDN9O95484 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC17.69■□□□□ 0.42
CLDN9O95484 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLDN9O95484 ASL-204ENST00000395331 1538 ntTSL 5 BASIC17.69■□□□□ 0.42
CLDN9O95484 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
CLDN9O95484 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CLDN9O95484 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CLDN9O95484 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
CLDN9O95484 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLDN9O95484 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC17.69■□□□□ 0.42
CLDN9O95484 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
CLDN9O95484 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
CLDN9O95484 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CLDN9O95484 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
CLDN9O95484 SLC25A6P5-201ENST00000435663 894 ntBASIC17.69■□□□□ 0.42
CLDN9O95484 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CLDN9O95484 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLDN9O95484 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC17.69■□□□□ 0.42
CLDN9O95484 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC17.69■□□□□ 0.42
CLDN9O95484 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC17.69■□□□□ 0.42
CLDN9O95484 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
CLDN9O95484 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLDN9O95484 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CLDN9O95484 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CLDN9O95484 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CLDN9O95484 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLDN9O95484 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLDN9O95484 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC17.69■□□□□ 0.42
CLDN9O95484 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
CLDN9O95484 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CLDN9O95484 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLDN9O95484 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLDN9O95484 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLDN9O95484 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC17.68■□□□□ 0.42
CLDN9O95484 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC17.68■□□□□ 0.42
CLDN9O95484 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLDN9O95484 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLDN9O95484 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC17.68■□□□□ 0.42
CLDN9O95484 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC17.68■□□□□ 0.42
CLDN9O95484 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLDN9O95484 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLDN9O95484 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLDN9O95484 CRAT-202ENST00000393384 973 ntTSL 2 BASIC17.68■□□□□ 0.42
CLDN9O95484 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CLDN9O95484 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC17.68■□□□□ 0.42
CLDN9O95484 ECEL1P2-202ENST00000465689 757 ntBASIC17.68■□□□□ 0.42
CLDN9O95484 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC17.68■□□□□ 0.42
CLDN9O95484 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC17.68■□□□□ 0.42
CLDN9O95484 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC17.68■□□□□ 0.42
CLDN9O95484 ETFA-216ENST00000560726 942 ntTSL 3 BASIC17.68■□□□□ 0.42
CLDN9O95484 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC17.68■□□□□ 0.42
CLDN9O95484 AC010240.3-201ENST00000607688 395 ntBASIC17.68■□□□□ 0.42
CLDN9O95484 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLDN9O95484 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLDN9O95484 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CLDN9O95484 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CLDN9O95484 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC17.68■□□□□ 0.42
CLDN9O95484 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLDN9O95484 AC026471.1-201ENST00000564629 3026 ntBASIC17.68■□□□□ 0.42
CLDN9O95484 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLDN9O95484 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CLDN9O95484 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLDN9O95484 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms