Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM13O60858 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM13O60858 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC18.02■□□□□ 0.48
TRIM13O60858 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC18.02■□□□□ 0.48
TRIM13O60858 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRIM13O60858 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC18.02■□□□□ 0.48
TRIM13O60858 AC012317.2-201ENST00000623305 2251 ntBASIC18.02■□□□□ 0.48
TRIM13O60858 AC139713.2-201ENST00000641328 2723 ntBASIC18.02■□□□□ 0.48
TRIM13O60858 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRIM13O60858 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
TRIM13O60858 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRIM13O60858 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
TRIM13O60858 MESTP1-201ENST00000404287 994 ntBASIC18.02■□□□□ 0.48
TRIM13O60858 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRIM13O60858 TK2-204ENST00000525974 1178 ntTSL 2 BASIC18.02■□□□□ 0.48
TRIM13O60858 C1QBPP2-201ENST00000528754 825 ntBASIC18.02■□□□□ 0.48
TRIM13O60858 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC18.02■□□□□ 0.48
TRIM13O60858 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
TRIM13O60858 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
TRIM13O60858 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC18.02■□□□□ 0.47
TRIM13O60858 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
TRIM13O60858 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
TRIM13O60858 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
TRIM13O60858 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC18.02■□□□□ 0.47
TRIM13O60858 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
TRIM13O60858 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
TRIM13O60858 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
TRIM13O60858 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
TRIM13O60858 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC18.02■□□□□ 0.47
TRIM13O60858 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
TRIM13O60858 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
TRIM13O60858 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM13O60858 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC18.01■□□□□ 0.47
TRIM13O60858 SDHAP2-201ENST00000455183 2001 ntBASIC18.01■□□□□ 0.47
TRIM13O60858 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC18.01■□□□□ 0.47
TRIM13O60858 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
TRIM13O60858 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC18.01■□□□□ 0.47
TRIM13O60858 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC18.01■□□□□ 0.47
TRIM13O60858 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM13O60858 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM13O60858 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM13O60858 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM13O60858 ID1-201ENST00000376105 1233 ntBASIC18.01■□□□□ 0.47
TRIM13O60858 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM13O60858 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM13O60858 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC18.01■□□□□ 0.47
TRIM13O60858 RPS15-203ENST00000586096 570 ntTSL 2 BASIC18.01■□□□□ 0.47
TRIM13O60858 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC18.01■□□□□ 0.47
TRIM13O60858 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM13O60858 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM13O60858 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM13O60858 PRORSD1P-202ENST00000563365 2154 ntBASIC18.01■□□□□ 0.47
TRIM13O60858 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
TRIM13O60858 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM13O60858 AC096733.2-201ENST00000609937 1394 ntBASIC18.01■□□□□ 0.47
TRIM13O60858 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC18.01■□□□□ 0.47
TRIM13O60858 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM13O60858 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC18.01■□□□□ 0.47
TRIM13O60858 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
TRIM13O60858 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM13O60858 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM13O60858 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM13O60858 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM13O60858 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
TRIM13O60858 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC18.01■□□□□ 0.47
TRIM13O60858 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
TRIM13O60858 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
TRIM13O60858 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
TRIM13O60858 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC18■□□□□ 0.47
TRIM13O60858 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC18■□□□□ 0.47
TRIM13O60858 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TRIM13O60858 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC18■□□□□ 0.47
TRIM13O60858 AL163051.1-201ENST00000569214 1512 ntBASIC18■□□□□ 0.47
TRIM13O60858 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
TRIM13O60858 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC18■□□□□ 0.47
TRIM13O60858 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
TRIM13O60858 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC18■□□□□ 0.47
TRIM13O60858 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC18■□□□□ 0.47
TRIM13O60858 AC009102.3-201ENST00000623118 1491 ntBASIC18■□□□□ 0.47
TRIM13O60858 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
TRIM13O60858 AC099343.3-201ENST00000605834 2503 ntBASIC18■□□□□ 0.47
TRIM13O60858 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC18■□□□□ 0.47
TRIM13O60858 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC18■□□□□ 0.47
TRIM13O60858 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
TRIM13O60858 AC006116.8-202ENST00000587620 1550 ntBASIC18■□□□□ 0.47
TRIM13O60858 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC18■□□□□ 0.47
TRIM13O60858 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC17.99■□□□□ 0.47
TRIM13O60858 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
TRIM13O60858 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRIM13O60858 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRIM13O60858 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
TRIM13O60858 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRIM13O60858 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
TRIM13O60858 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRIM13O60858 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRIM13O60858 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
TRIM13O60858 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRIM13O60858 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC17.99■□□□□ 0.47
TRIM13O60858 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
TRIM13O60858 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC17.99■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms