Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
NKX3-1Q99801 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
NKX3-1Q99801 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
NKX3-1Q99801 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
NKX3-1Q99801 AC099398.1-201ENST00000567919 2776 ntBASIC16■□□□□ 0.15
NKX3-1Q99801 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
NKX3-1Q99801 HTR7P1-201ENST00000538670 1336 ntBASIC16■□□□□ 0.15
NKX3-1Q99801 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC16■□□□□ 0.15
NKX3-1Q99801 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
NKX3-1Q99801 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC16■□□□□ 0.15
NKX3-1Q99801 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
NKX3-1Q99801 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC16■□□□□ 0.15
NKX3-1Q99801 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
NKX3-1Q99801 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC16■□□□□ 0.15
NKX3-1Q99801 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC16■□□□□ 0.15
NKX3-1Q99801 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC16■□□□□ 0.15
NKX3-1Q99801 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC16■□□□□ 0.15
NKX3-1Q99801 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
NKX3-1Q99801 RN7SL471P-201ENST00000580476 299 ntBASIC16■□□□□ 0.15
NKX3-1Q99801 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC16■□□□□ 0.15
NKX3-1Q99801 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
NKX3-1Q99801 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
NKX3-1Q99801 AC008556.1-201ENST00000610908 2040 ntBASIC16■□□□□ 0.15
NKX3-1Q99801 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC16■□□□□ 0.15
NKX3-1Q99801 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
NKX3-1Q99801 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC16■□□□□ 0.15
NKX3-1Q99801 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC16■□□□□ 0.15
NKX3-1Q99801 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
NKX3-1Q99801 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC16■□□□□ 0.15
NKX3-1Q99801 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
NKX3-1Q99801 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
NKX3-1Q99801 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
NKX3-1Q99801 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
NKX3-1Q99801 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
NKX3-1Q99801 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC15.99■□□□□ 0.15
NKX3-1Q99801 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
NKX3-1Q99801 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
NKX3-1Q99801 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC15.99■□□□□ 0.15
NKX3-1Q99801 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
NKX3-1Q99801 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
NKX3-1Q99801 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
NKX3-1Q99801 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
NKX3-1Q99801 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
NKX3-1Q99801 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
NKX3-1Q99801 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
NKX3-1Q99801 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
NKX3-1Q99801 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC15.99■□□□□ 0.15
NKX3-1Q99801 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC15.99■□□□□ 0.15
NKX3-1Q99801 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
NKX3-1Q99801 UBE2SP1-201ENST00000450587 669 ntBASIC15.99■□□□□ 0.15
NKX3-1Q99801 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC15.99■□□□□ 0.15
NKX3-1Q99801 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC15.99■□□□□ 0.15
NKX3-1Q99801 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC15.99■□□□□ 0.15
NKX3-1Q99801 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC15.99■□□□□ 0.15
NKX3-1Q99801 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
NKX3-1Q99801 KRT8P45-201ENST00000414328 1447 ntBASIC15.99■□□□□ 0.15
NKX3-1Q99801 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
NKX3-1Q99801 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
NKX3-1Q99801 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC15.99■□□□□ 0.15
NKX3-1Q99801 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
NKX3-1Q99801 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
NKX3-1Q99801 POR-209ENST00000439269 1858 ntTSL 2 BASIC15.99■□□□□ 0.15
NKX3-1Q99801 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
NKX3-1Q99801 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
NKX3-1Q99801 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
NKX3-1Q99801 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
NKX3-1Q99801 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC15.98■□□□□ 0.15
NKX3-1Q99801 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
NKX3-1Q99801 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
NKX3-1Q99801 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
NKX3-1Q99801 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
NKX3-1Q99801 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
NKX3-1Q99801 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
NKX3-1Q99801 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
NKX3-1Q99801 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
NKX3-1Q99801 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
NKX3-1Q99801 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
NKX3-1Q99801 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
NKX3-1Q99801 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
NKX3-1Q99801 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
NKX3-1Q99801 ISG20-202ENST00000379224 540 ntTSL 3 BASIC15.98■□□□□ 0.15
NKX3-1Q99801 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
NKX3-1Q99801 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
NKX3-1Q99801 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC15.98■□□□□ 0.15
NKX3-1Q99801 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
NKX3-1Q99801 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC15.98■□□□□ 0.15
NKX3-1Q99801 AP002982.1-201ENST00000492365 877 ntBASIC15.98■□□□□ 0.15
NKX3-1Q99801 FDX2-207ENST00000494368 584 ntTSL 4 BASIC15.98■□□□□ 0.15
NKX3-1Q99801 PRSS44-201ENST00000515154 1146 ntBASIC15.98■□□□□ 0.15
NKX3-1Q99801 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC15.98■□□□□ 0.15
NKX3-1Q99801 RNF121-214ENST00000533380 870 ntTSL 3 BASIC15.98■□□□□ 0.15
NKX3-1Q99801 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
NKX3-1Q99801 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC15.98■□□□□ 0.15
NKX3-1Q99801 AC110285.5-201ENST00000611501 352 ntBASIC15.98■□□□□ 0.15
NKX3-1Q99801 AC011298.2-201ENST00000617989 482 ntBASIC15.98■□□□□ 0.15
NKX3-1Q99801 CR392000.1-201ENST00000624770 1228 ntBASIC15.98■□□□□ 0.15
NKX3-1Q99801 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
NKX3-1Q99801 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC15.98■□□□□ 0.15
NKX3-1Q99801 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC15.98■□□□□ 0.15
NKX3-1Q99801 AC138028.4-201ENST00000564984 1845 ntBASIC15.98■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms