Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CLIP3Q96DZ5 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC17.66■□□□□ 0.42
CLIP3Q96DZ5 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC17.66■□□□□ 0.42
CLIP3Q96DZ5 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CLIP3Q96DZ5 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
CLIP3Q96DZ5 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLIP3Q96DZ5 AC034236.2-201ENST00000606662 1610 ntBASIC17.65■□□□□ 0.42
CLIP3Q96DZ5 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC17.65■□□□□ 0.42
CLIP3Q96DZ5 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLIP3Q96DZ5 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLIP3Q96DZ5 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC17.65■□□□□ 0.42
CLIP3Q96DZ5 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
CLIP3Q96DZ5 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC17.65■□□□□ 0.42
CLIP3Q96DZ5 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLIP3Q96DZ5 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CLIP3Q96DZ5 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
CLIP3Q96DZ5 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLIP3Q96DZ5 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLIP3Q96DZ5 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC17.65■□□□□ 0.42
CLIP3Q96DZ5 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC17.65■□□□□ 0.42
CLIP3Q96DZ5 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
CLIP3Q96DZ5 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLIP3Q96DZ5 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CLIP3Q96DZ5 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC17.65■□□□□ 0.42
CLIP3Q96DZ5 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC17.65■□□□□ 0.42
CLIP3Q96DZ5 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC17.65■□□□□ 0.42
CLIP3Q96DZ5 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.65■□□□□ 0.42
CLIP3Q96DZ5 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLIP3Q96DZ5 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLIP3Q96DZ5 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLIP3Q96DZ5 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLIP3Q96DZ5 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLIP3Q96DZ5 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLIP3Q96DZ5 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLIP3Q96DZ5 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLIP3Q96DZ5 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
CLIP3Q96DZ5 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
CLIP3Q96DZ5 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLIP3Q96DZ5 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
CLIP3Q96DZ5 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CLIP3Q96DZ5 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC17.65■□□□□ 0.42
CLIP3Q96DZ5 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLIP3Q96DZ5 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLIP3Q96DZ5 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC17.65■□□□□ 0.42
CLIP3Q96DZ5 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
CLIP3Q96DZ5 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
CLIP3Q96DZ5 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.42
CLIP3Q96DZ5 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.42
CLIP3Q96DZ5 HOXB1-202ENST00000577092 1414 ntBASIC17.64■□□□□ 0.42
CLIP3Q96DZ5 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLIP3Q96DZ5 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLIP3Q96DZ5 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CLIP3Q96DZ5 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.64■□□□□ 0.41
CLIP3Q96DZ5 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
CLIP3Q96DZ5 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
CLIP3Q96DZ5 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLIP3Q96DZ5 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
CLIP3Q96DZ5 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CLIP3Q96DZ5 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CLIP3Q96DZ5 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CLIP3Q96DZ5 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLIP3Q96DZ5 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC17.64■□□□□ 0.41
CLIP3Q96DZ5 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC17.64■□□□□ 0.41
CLIP3Q96DZ5 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC17.64■□□□□ 0.41
CLIP3Q96DZ5 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLIP3Q96DZ5 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.64■□□□□ 0.41
CLIP3Q96DZ5 HCG4P8-203ENST00000443049 980 ntBASIC17.64■□□□□ 0.41
CLIP3Q96DZ5 SPDYE13P-201ENST00000445314 798 ntBASIC17.64■□□□□ 0.41
CLIP3Q96DZ5 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC17.64■□□□□ 0.41
CLIP3Q96DZ5 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC17.64■□□□□ 0.41
CLIP3Q96DZ5 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC17.64■□□□□ 0.41
CLIP3Q96DZ5 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLIP3Q96DZ5 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLIP3Q96DZ5 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLIP3Q96DZ5 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.64■□□□□ 0.41
CLIP3Q96DZ5 AC012313.1-201ENST00000593393 3059 ntBASIC17.64■□□□□ 0.41
CLIP3Q96DZ5 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLIP3Q96DZ5 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC17.64■□□□□ 0.41
CLIP3Q96DZ5 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
CLIP3Q96DZ5 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLIP3Q96DZ5 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLIP3Q96DZ5 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CLIP3Q96DZ5 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
CLIP3Q96DZ5 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC17.64■□□□□ 0.41
CLIP3Q96DZ5 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CLIP3Q96DZ5 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLIP3Q96DZ5 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
CLIP3Q96DZ5 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLIP3Q96DZ5 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLIP3Q96DZ5 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
CLIP3Q96DZ5 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC17.63■□□□□ 0.41
CLIP3Q96DZ5 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CLIP3Q96DZ5 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLIP3Q96DZ5 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC17.63■□□□□ 0.41
CLIP3Q96DZ5 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLIP3Q96DZ5 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC17.63■□□□□ 0.41
CLIP3Q96DZ5 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
CLIP3Q96DZ5 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC17.63■□□□□ 0.41
CLIP3Q96DZ5 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC17.63■□□□□ 0.41
CLIP3Q96DZ5 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms