Protein–RNA interactions for Protein: Q96DC8

ECHDC3, Enoyl-CoA hydratase domain-containing protein 3, mitochondrial, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC3Q96DC8 AIRN-201ENST00000601203 4374 ntBASIC18.28■□□□□ 0.52
ECHDC3Q96DC8 AC120498.9-201ENST00000339021 3867 ntBASIC18.27■□□□□ 0.52
ECHDC3Q96DC8 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
ECHDC3Q96DC8 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
ECHDC3Q96DC8 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
ECHDC3Q96DC8 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
ECHDC3Q96DC8 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC18.27■□□□□ 0.52
ECHDC3Q96DC8 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
ECHDC3Q96DC8 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
ECHDC3Q96DC8 LINC00167-201ENST00000530583 1419 ntBASIC18.27■□□□□ 0.52
ECHDC3Q96DC8 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
ECHDC3Q96DC8 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
ECHDC3Q96DC8 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
ECHDC3Q96DC8 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC18.27■□□□□ 0.52
ECHDC3Q96DC8 CHCHD2P8-201ENST00000429873 447 ntBASIC18.27■□□□□ 0.52
ECHDC3Q96DC8 AP002383.4-201ENST00000442518 975 ntBASIC18.27■□□□□ 0.52
ECHDC3Q96DC8 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC18.27■□□□□ 0.52
ECHDC3Q96DC8 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC18.27■□□□□ 0.52
ECHDC3Q96DC8 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
ECHDC3Q96DC8 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
ECHDC3Q96DC8 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC18.27■□□□□ 0.51
ECHDC3Q96DC8 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC18.27■□□□□ 0.51
ECHDC3Q96DC8 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
ECHDC3Q96DC8 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC18.27■□□□□ 0.51
ECHDC3Q96DC8 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC18.27■□□□□ 0.51
ECHDC3Q96DC8 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC18.26■□□□□ 0.51
ECHDC3Q96DC8 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
ECHDC3Q96DC8 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
ECHDC3Q96DC8 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC18.26■□□□□ 0.51
ECHDC3Q96DC8 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
ECHDC3Q96DC8 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
ECHDC3Q96DC8 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
ECHDC3Q96DC8 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
ECHDC3Q96DC8 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
ECHDC3Q96DC8 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
ECHDC3Q96DC8 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
ECHDC3Q96DC8 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
ECHDC3Q96DC8 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
ECHDC3Q96DC8 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC18.26■□□□□ 0.51
ECHDC3Q96DC8 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
ECHDC3Q96DC8 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
ECHDC3Q96DC8 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
ECHDC3Q96DC8 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC18.26■□□□□ 0.51
ECHDC3Q96DC8 DDT-203ENST00000403754 569 ntTSL 3 BASIC18.26■□□□□ 0.51
ECHDC3Q96DC8 DDT-206ENST00000430101 573 ntTSL 2 BASIC18.26■□□□□ 0.51
ECHDC3Q96DC8 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC18.26■□□□□ 0.51
ECHDC3Q96DC8 RN7SL606P-201ENST00000472779 293 ntBASIC18.26■□□□□ 0.51
ECHDC3Q96DC8 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC18.26■□□□□ 0.51
ECHDC3Q96DC8 NMU-205ENST00000511469 756 ntTSL 3 BASIC18.26■□□□□ 0.51
ECHDC3Q96DC8 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC18.26■□□□□ 0.51
ECHDC3Q96DC8 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC18.26■□□□□ 0.51
ECHDC3Q96DC8 AC090616.6-201ENST00000582640 721 ntBASIC18.26■□□□□ 0.51
ECHDC3Q96DC8 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC18.26■□□□□ 0.51
ECHDC3Q96DC8 BCL10-202ENST00000620248 774 ntTSL 5 BASIC18.26■□□□□ 0.51
ECHDC3Q96DC8 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
ECHDC3Q96DC8 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC18.26■□□□□ 0.51
ECHDC3Q96DC8 PHGDH-209ENST00000641074 1780 ntBASIC18.26■□□□□ 0.51
ECHDC3Q96DC8 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC18.26■□□□□ 0.51
ECHDC3Q96DC8 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
ECHDC3Q96DC8 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
ECHDC3Q96DC8 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC18.26■□□□□ 0.51
ECHDC3Q96DC8 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
ECHDC3Q96DC8 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
ECHDC3Q96DC8 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
ECHDC3Q96DC8 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
ECHDC3Q96DC8 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
ECHDC3Q96DC8 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
ECHDC3Q96DC8 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
ECHDC3Q96DC8 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
ECHDC3Q96DC8 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
ECHDC3Q96DC8 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
ECHDC3Q96DC8 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC18.25■□□□□ 0.51
ECHDC3Q96DC8 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC18.25■□□□□ 0.51
ECHDC3Q96DC8 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
ECHDC3Q96DC8 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
ECHDC3Q96DC8 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
ECHDC3Q96DC8 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
ECHDC3Q96DC8 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
ECHDC3Q96DC8 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
ECHDC3Q96DC8 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
ECHDC3Q96DC8 AC093677.2-201ENST00000600169 1863 ntBASIC18.25■□□□□ 0.51
ECHDC3Q96DC8 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
ECHDC3Q96DC8 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC18.25■□□□□ 0.51
ECHDC3Q96DC8 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
ECHDC3Q96DC8 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
ECHDC3Q96DC8 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
ECHDC3Q96DC8 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC18.25■□□□□ 0.51
ECHDC3Q96DC8 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
ECHDC3Q96DC8 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
ECHDC3Q96DC8 MIR3180-1-201ENST00000580374 94 ntBASIC18.25■□□□□ 0.51
ECHDC3Q96DC8 MIR3180-3-201ENST00000584616 94 ntBASIC18.25■□□□□ 0.51
ECHDC3Q96DC8 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
ECHDC3Q96DC8 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
ECHDC3Q96DC8 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
ECHDC3Q96DC8 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
ECHDC3Q96DC8 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
ECHDC3Q96DC8 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
ECHDC3Q96DC8 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
ECHDC3Q96DC8 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC18.24■□□□□ 0.51
ECHDC3Q96DC8 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms