Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 DAP-202ENST00000432074 1048 ntTSL 2 BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 AC091607.1-201ENST00000490318 1060 ntBASIC5.66□□□□□ -1.5
SYNE1Q8NF91 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
SYNE1Q8NF91 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 AKR1C7P-201ENST00000305623 895 ntBASIC5.65□□□□□ -1.5
SYNE1Q8NF91 DFFB-203ENST00000341385 572 ntTSL 5 BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 AL160237.2-201ENST00000556165 472 ntBASIC5.65□□□□□ -1.5
SYNE1Q8NF91 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 KRT8P3-201ENST00000519669 1449 ntBASIC5.65□□□□□ -1.5
SYNE1Q8NF91 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 GAD2-202ENST00000376248 680 ntTSL 5 BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 MIR3180-5-201ENST00000583743 153 ntBASIC5.65□□□□□ -1.5
SYNE1Q8NF91 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 AP002469.2-201ENST00000531724 424 ntBASIC5.65□□□□□ -1.5
SYNE1Q8NF91 ZNF444P1-201ENST00000559497 298 ntBASIC5.65□□□□□ -1.5
SYNE1Q8NF91 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
SYNE1Q8NF91 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC5.65□□□□□ -1.51
SYNE1Q8NF91 AC093484.2-201ENST00000580996 2166 ntBASIC5.65□□□□□ -1.51
SYNE1Q8NF91 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC5.65□□□□□ -1.51
SYNE1Q8NF91 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
SYNE1Q8NF91 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
SYNE1Q8NF91 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC5.65□□□□□ -1.51
SYNE1Q8NF91 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
SYNE1Q8NF91 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
SYNE1Q8NF91 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
SYNE1Q8NF91 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
SYNE1Q8NF91 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC5.65□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 70.6 ms