Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC11.44□□□□□ -0.58
LINC00643Q86TS7 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00643Q86TS7 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC11.44□□□□□ -0.58
LINC00643Q86TS7 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC11.44□□□□□ -0.58
LINC00643Q86TS7 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00643Q86TS7 RNF146-206ENST00000480444 843 ntTSL 2 BASIC11.44□□□□□ -0.58
LINC00643Q86TS7 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC11.44□□□□□ -0.58
LINC00643Q86TS7 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC11.44□□□□□ -0.58
LINC00643Q86TS7 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
LINC00643Q86TS7 MIR6765-201ENST00000614092 87 ntBASIC11.44□□□□□ -0.58
LINC00643Q86TS7 HGH1-207ENST00000628266 258 ntTSL 5 BASIC11.44□□□□□ -0.58
LINC00643Q86TS7 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC11.44□□□□□ -0.58
LINC00643Q86TS7 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC11.44□□□□□ -0.58
LINC00643Q86TS7 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00643Q86TS7 AC093010.1-201ENST00000473625 1624 ntBASIC11.44□□□□□ -0.58
LINC00643Q86TS7 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00643Q86TS7 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00643Q86TS7 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00643Q86TS7 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC11.44□□□□□ -0.58
LINC00643Q86TS7 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC11.44□□□□□ -0.58
LINC00643Q86TS7 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00643Q86TS7 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00643Q86TS7 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC11.44□□□□□ -0.58
LINC00643Q86TS7 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00643Q86TS7 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00643Q86TS7 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC11.44□□□□□ -0.58
LINC00643Q86TS7 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00643Q86TS7 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00643Q86TS7 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00643Q86TS7 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00643Q86TS7 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC11.44□□□□□ -0.58
LINC00643Q86TS7 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00643Q86TS7 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
LINC00643Q86TS7 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00643Q86TS7 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC11.43□□□□□ -0.58
LINC00643Q86TS7 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00643Q86TS7 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC11.43□□□□□ -0.58
LINC00643Q86TS7 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00643Q86TS7 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC11.43□□□□□ -0.58
LINC00643Q86TS7 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00643Q86TS7 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC11.43□□□□□ -0.58
LINC00643Q86TS7 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC11.43□□□□□ -0.58
LINC00643Q86TS7 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC11.43□□□□□ -0.58
LINC00643Q86TS7 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00643Q86TS7 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00643Q86TS7 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00643Q86TS7 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00643Q86TS7 WT1-209ENST00000530998 2421 ntTSL 2 BASIC11.43□□□□□ -0.58
LINC00643Q86TS7 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00643Q86TS7 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC11.43□□□□□ -0.58
LINC00643Q86TS7 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00643Q86TS7 NME9-203ENST00000383180 2133 ntTSL 2 BASIC11.43□□□□□ -0.58
LINC00643Q86TS7 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC11.43□□□□□ -0.58
LINC00643Q86TS7 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00643Q86TS7 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00643Q86TS7 AC133552.2-201ENST00000619106 1032 ntBASIC11.43□□□□□ -0.58
LINC00643Q86TS7 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC11.43□□□□□ -0.58
LINC00643Q86TS7 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC11.43□□□□□ -0.58
LINC00643Q86TS7 UBQLN4P1-201ENST00000461599 1801 ntBASIC11.43□□□□□ -0.58
LINC00643Q86TS7 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00643Q86TS7 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC11.43□□□□□ -0.58
LINC00643Q86TS7 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC11.43□□□□□ -0.58
LINC00643Q86TS7 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00643Q86TS7 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00643Q86TS7 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC11.43□□□□□ -0.58
LINC00643Q86TS7 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00643Q86TS7 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC11.43□□□□□ -0.58
LINC00643Q86TS7 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
LINC00643Q86TS7 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC11.43□□□□□ -0.58
LINC00643Q86TS7 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00643Q86TS7 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
LINC00643Q86TS7 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00643Q86TS7 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00643Q86TS7 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00643Q86TS7 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00643Q86TS7 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00643Q86TS7 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00643Q86TS7 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00643Q86TS7 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00643Q86TS7 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00643Q86TS7 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00643Q86TS7 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00643Q86TS7 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00643Q86TS7 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00643Q86TS7 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00643Q86TS7 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00643Q86TS7 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
LINC00643Q86TS7 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC11.42□□□□□ -0.58
LINC00643Q86TS7 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00643Q86TS7 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00643Q86TS7 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00643Q86TS7 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC11.42□□□□□ -0.58
LINC00643Q86TS7 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC11.42□□□□□ -0.58
LINC00643Q86TS7 MIR6722-201ENST00000617286 78 ntBASIC11.42□□□□□ -0.58
LINC00643Q86TS7 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00643Q86TS7 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC11.42□□□□□ -0.58
LINC00643Q86TS7 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC11.42□□□□□ -0.58
LINC00643Q86TS7 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC11.42□□□□□ -0.58
LINC00643Q86TS7 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC11.42□□□□□ -0.58
LINC00643Q86TS7 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms