Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC19.53■□□□□ 0.72
SOX4Q06945 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SOX4Q06945 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SOX4Q06945 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
SOX4Q06945 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC19.53■□□□□ 0.72
SOX4Q06945 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SOX4Q06945 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SOX4Q06945 TNXA-203ENST00000507684 2038 ntBASIC19.52■□□□□ 0.72
SOX4Q06945 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC19.52■□□□□ 0.72
SOX4Q06945 BX323043.1-201ENST00000641006 1765 ntBASIC19.52■□□□□ 0.72
SOX4Q06945 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SOX4Q06945 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SOX4Q06945 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SOX4Q06945 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC19.52■□□□□ 0.72
SOX4Q06945 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC19.52■□□□□ 0.72
SOX4Q06945 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SOX4Q06945 TSPY12P-201ENST00000421279 868 ntBASIC19.52■□□□□ 0.72
SOX4Q06945 AC068472.1-201ENST00000474589 881 ntBASIC19.52■□□□□ 0.72
SOX4Q06945 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC19.52■□□□□ 0.72
SOX4Q06945 RN7SL510P-201ENST00000581311 263 ntBASIC19.52■□□□□ 0.72
SOX4Q06945 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC19.52■□□□□ 0.72
SOX4Q06945 AC099336.1-202ENST00000602961 463 ntBASIC19.52■□□□□ 0.72
SOX4Q06945 IFNL4P1-201ENST00000607083 540 ntBASIC19.52■□□□□ 0.72
SOX4Q06945 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
SOX4Q06945 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC19.52■□□□□ 0.72
SOX4Q06945 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC19.52■□□□□ 0.72
SOX4Q06945 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SOX4Q06945 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SOX4Q06945 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SOX4Q06945 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC19.52■□□□□ 0.71
SOX4Q06945 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
SOX4Q06945 USP49-202ENST00000373010 2446 ntTSL 5 BASIC19.52■□□□□ 0.71
SOX4Q06945 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC19.52■□□□□ 0.71
SOX4Q06945 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC19.52■□□□□ 0.71
SOX4Q06945 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SOX4Q06945 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SOX4Q06945 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC19.51■□□□□ 0.71
SOX4Q06945 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
SOX4Q06945 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SOX4Q06945 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
SOX4Q06945 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
SOX4Q06945 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC19.51■□□□□ 0.71
SOX4Q06945 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC19.51■□□□□ 0.71
SOX4Q06945 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC19.51■□□□□ 0.71
SOX4Q06945 AC246785.2-201ENST00000432512 513 ntBASIC19.51■□□□□ 0.71
SOX4Q06945 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC19.51■□□□□ 0.71
SOX4Q06945 CDV3-207ENST00000508481 661 ntTSL 3 BASIC19.51■□□□□ 0.71
SOX4Q06945 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SOX4Q06945 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SOX4Q06945 AC011840.4-201ENST00000578471 627 ntBASIC19.51■□□□□ 0.71
SOX4Q06945 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC19.51■□□□□ 0.71
SOX4Q06945 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
SOX4Q06945 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC19.51■□□□□ 0.71
SOX4Q06945 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
SOX4Q06945 GMCL1P1-201ENST00000463439 1581 ntBASIC19.51■□□□□ 0.71
SOX4Q06945 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC19.51■□□□□ 0.71
SOX4Q06945 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SOX4Q06945 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
SOX4Q06945 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.51■□□□□ 0.71
SOX4Q06945 AC073592.3-201ENST00000625118 1834 ntBASIC19.51■□□□□ 0.71
SOX4Q06945 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SOX4Q06945 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
SOX4Q06945 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC19.5■□□□□ 0.71
SOX4Q06945 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
SOX4Q06945 WIZP1-201ENST00000531444 2299 ntBASIC19.5■□□□□ 0.71
SOX4Q06945 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SOX4Q06945 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
SOX4Q06945 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SOX4Q06945 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SOX4Q06945 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SOX4Q06945 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SOX4Q06945 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC19.5■□□□□ 0.71
SOX4Q06945 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
SOX4Q06945 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SOX4Q06945 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC19.5■□□□□ 0.71
SOX4Q06945 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC19.5■□□□□ 0.71
SOX4Q06945 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SOX4Q06945 KRT18P31-201ENST00000506277 1292 ntBASIC19.5■□□□□ 0.71
SOX4Q06945 ABR-204ENST00000543210 1049 ntTSL 2 BASIC19.5■□□□□ 0.71
SOX4Q06945 ABR-217ENST00000572441 563 ntTSL 4 BASIC19.5■□□□□ 0.71
SOX4Q06945 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC19.5■□□□□ 0.71
SOX4Q06945 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC19.5■□□□□ 0.71
SOX4Q06945 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
SOX4Q06945 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SOX4Q06945 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC19.5■□□□□ 0.71
SOX4Q06945 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
SOX4Q06945 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SOX4Q06945 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC19.5■□□□□ 0.71
SOX4Q06945 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SOX4Q06945 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC19.5■□□□□ 0.71
SOX4Q06945 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC19.5■□□□□ 0.71
SOX4Q06945 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SOX4Q06945 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
SOX4Q06945 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC19.49■□□□□ 0.71
SOX4Q06945 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC19.49■□□□□ 0.71
SOX4Q06945 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SOX4Q06945 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SOX4Q06945 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC19.49■□□□□ 0.71
SOX4Q06945 AC111152.3-201ENST00000569699 673 ntBASIC19.49■□□□□ 0.71
SOX4Q06945 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms