Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RFX3P48380 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RFX3P48380 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC17.23■□□□□ 0.35
RFX3P48380 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC17.22■□□□□ 0.35
RFX3P48380 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
RFX3P48380 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC17.22■□□□□ 0.35
RFX3P48380 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RFX3P48380 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC17.22■□□□□ 0.35
RFX3P48380 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC17.22■□□□□ 0.35
RFX3P48380 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RFX3P48380 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
RFX3P48380 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
RFX3P48380 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC17.22■□□□□ 0.35
RFX3P48380 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RFX3P48380 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RFX3P48380 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC17.22■□□□□ 0.35
RFX3P48380 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC17.22■□□□□ 0.35
RFX3P48380 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC17.22■□□□□ 0.35
RFX3P48380 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC17.22■□□□□ 0.35
RFX3P48380 TMA16-209ENST00000513272 803 ntTSL 2 BASIC17.22■□□□□ 0.35
RFX3P48380 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC17.22■□□□□ 0.35
RFX3P48380 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC17.22■□□□□ 0.35
RFX3P48380 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RFX3P48380 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
RFX3P48380 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
RFX3P48380 AR-207ENST00000612010 3896 ntTSL 5 BASIC17.22■□□□□ 0.35
RFX3P48380 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RFX3P48380 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC17.22■□□□□ 0.35
RFX3P48380 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RFX3P48380 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC17.22■□□□□ 0.35
RFX3P48380 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
RFX3P48380 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RFX3P48380 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC17.22■□□□□ 0.35
RFX3P48380 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RFX3P48380 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RFX3P48380 KRT8P45-201ENST00000414328 1447 ntBASIC17.21■□□□□ 0.35
RFX3P48380 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
RFX3P48380 AC090164.3-201ENST00000610780 2143 ntBASIC17.21■□□□□ 0.35
RFX3P48380 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC17.21■□□□□ 0.35
RFX3P48380 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
RFX3P48380 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
RFX3P48380 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC17.21■□□□□ 0.35
RFX3P48380 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC17.21■□□□□ 0.35
RFX3P48380 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RFX3P48380 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
RFX3P48380 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC17.21■□□□□ 0.35
RFX3P48380 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
RFX3P48380 GXYLT1P6-201ENST00000456472 1187 ntBASIC17.21■□□□□ 0.35
RFX3P48380 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC17.21■□□□□ 0.35
RFX3P48380 CR769767.2-201ENST00000622735 460 ntBASIC17.21■□□□□ 0.35
RFX3P48380 AC073912.3-201ENST00000624414 853 ntBASIC17.21■□□□□ 0.35
RFX3P48380 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC17.21■□□□□ 0.35
RFX3P48380 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RFX3P48380 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RFX3P48380 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
RFX3P48380 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RFX3P48380 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC17.21■□□□□ 0.34
RFX3P48380 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
RFX3P48380 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
RFX3P48380 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC17.2■□□□□ 0.34
RFX3P48380 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RFX3P48380 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
RFX3P48380 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
RFX3P48380 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
RFX3P48380 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
RFX3P48380 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RFX3P48380 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
RFX3P48380 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RFX3P48380 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC17.2■□□□□ 0.34
RFX3P48380 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
RFX3P48380 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RFX3P48380 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RFX3P48380 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RFX3P48380 MIR564-202ENST00000385049 94 ntBASIC17.2■□□□□ 0.34
RFX3P48380 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
RFX3P48380 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RFX3P48380 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC17.2■□□□□ 0.34
RFX3P48380 AC010653.2-201ENST00000623505 997 ntBASIC17.2■□□□□ 0.34
RFX3P48380 MYC-208ENST00000641036 567 ntBASIC17.2■□□□□ 0.34
RFX3P48380 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RFX3P48380 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RFX3P48380 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
RFX3P48380 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RFX3P48380 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
RFX3P48380 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC17.2■□□□□ 0.34
RFX3P48380 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC17.2■□□□□ 0.34
RFX3P48380 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RFX3P48380 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
RFX3P48380 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RFX3P48380 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC17.2■□□□□ 0.34
RFX3P48380 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
RFX3P48380 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RFX3P48380 KRT18P22-201ENST00000402024 1347 ntBASIC17.2■□□□□ 0.34
RFX3P48380 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC17.2■□□□□ 0.34
RFX3P48380 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC17.2■□□□□ 0.34
RFX3P48380 AC005332.8-201ENST00000622750 2735 ntBASIC17.2■□□□□ 0.34
RFX3P48380 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RFX3P48380 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
RFX3P48380 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
RFX3P48380 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms