Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
HLA-DMBP28068 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC13.99□□□□□ -0.17
HLA-DMBP28068 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC13.99□□□□□ -0.17
HLA-DMBP28068 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HLA-DMBP28068 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC13.99□□□□□ -0.17
HLA-DMBP28068 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
HLA-DMBP28068 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HLA-DMBP28068 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HLA-DMBP28068 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
HLA-DMBP28068 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC13.99□□□□□ -0.17
HLA-DMBP28068 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC13.98□□□□□ -0.17
HLA-DMBP28068 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC13.98□□□□□ -0.17
HLA-DMBP28068 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC13.98□□□□□ -0.17
HLA-DMBP28068 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
HLA-DMBP28068 AL109659.2-201ENST00000606809 1674 ntBASIC13.98□□□□□ -0.17
HLA-DMBP28068 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HLA-DMBP28068 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HLA-DMBP28068 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
HLA-DMBP28068 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HLA-DMBP28068 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HLA-DMBP28068 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
HLA-DMBP28068 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC13.98□□□□□ -0.17
HLA-DMBP28068 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HLA-DMBP28068 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HLA-DMBP28068 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HLA-DMBP28068 SRI-203ENST00000419179 1307 ntTSL 2 BASIC13.98□□□□□ -0.17
HLA-DMBP28068 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC13.98□□□□□ -0.17
HLA-DMBP28068 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC13.98□□□□□ -0.17
HLA-DMBP28068 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HLA-DMBP28068 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
HLA-DMBP28068 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC13.98□□□□□ -0.17
HLA-DMBP28068 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HLA-DMBP28068 MFAP1P1-201ENST00000442257 1255 ntBASIC13.98□□□□□ -0.17
HLA-DMBP28068 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HLA-DMBP28068 AP003071.4-201ENST00000562276 1284 ntBASIC13.98□□□□□ -0.17
HLA-DMBP28068 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC13.98□□□□□ -0.17
HLA-DMBP28068 GRAP-204ENST00000573099 846 ntTSL 3 BASIC13.98□□□□□ -0.17
HLA-DMBP28068 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
HLA-DMBP28068 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HLA-DMBP28068 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HLA-DMBP28068 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HLA-DMBP28068 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HLA-DMBP28068 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC13.98□□□□□ -0.17
HLA-DMBP28068 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
HLA-DMBP28068 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HLA-DMBP28068 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC13.98□□□□□ -0.17
HLA-DMBP28068 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HLA-DMBP28068 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HLA-DMBP28068 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HLA-DMBP28068 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HLA-DMBP28068 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
HLA-DMBP28068 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC13.98□□□□□ -0.17
HLA-DMBP28068 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HLA-DMBP28068 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HLA-DMBP28068 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HLA-DMBP28068 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
HLA-DMBP28068 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
HLA-DMBP28068 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HLA-DMBP28068 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HLA-DMBP28068 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC13.97□□□□□ -0.17
HLA-DMBP28068 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HLA-DMBP28068 AP000997.3-201ENST00000623333 2250 ntBASIC13.97□□□□□ -0.17
HLA-DMBP28068 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HLA-DMBP28068 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HLA-DMBP28068 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HLA-DMBP28068 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HLA-DMBP28068 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
HLA-DMBP28068 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC13.97□□□□□ -0.17
HLA-DMBP28068 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC13.97□□□□□ -0.17
HLA-DMBP28068 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC13.97□□□□□ -0.17
HLA-DMBP28068 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC13.97□□□□□ -0.17
HLA-DMBP28068 AL355075.4-201ENST00000554988 638 ntBASIC13.97□□□□□ -0.17
HLA-DMBP28068 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC13.97□□□□□ -0.17
HLA-DMBP28068 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC13.97□□□□□ -0.17
HLA-DMBP28068 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
HLA-DMBP28068 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC13.97□□□□□ -0.17
HLA-DMBP28068 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
HLA-DMBP28068 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC13.97□□□□□ -0.17
HLA-DMBP28068 POR-209ENST00000439269 1858 ntTSL 2 BASIC13.97□□□□□ -0.17
HLA-DMBP28068 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HLA-DMBP28068 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HLA-DMBP28068 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HLA-DMBP28068 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC13.96□□□□□ -0.17
HLA-DMBP28068 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
HLA-DMBP28068 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
HLA-DMBP28068 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC13.96□□□□□ -0.17
HLA-DMBP28068 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC13.96□□□□□ -0.17
HLA-DMBP28068 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
HLA-DMBP28068 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
HLA-DMBP28068 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
HLA-DMBP28068 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
HLA-DMBP28068 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
HLA-DMBP28068 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
HLA-DMBP28068 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
HLA-DMBP28068 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC13.96□□□□□ -0.17
HLA-DMBP28068 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
HLA-DMBP28068 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
HLA-DMBP28068 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
HLA-DMBP28068 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
HLA-DMBP28068 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms