Protein–RNA interactions for Protein: O95628

CNOT4, CCR4-NOT transcription complex subunit 4, humanhuman

Known RBP Predictions only

Length 575 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4O95628 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CNOT4O95628 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC16.29■□□□□ 0.2
CNOT4O95628 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CNOT4O95628 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CNOT4O95628 PVRIG2P-201ENST00000435460 978 ntBASIC16.29■□□□□ 0.2
CNOT4O95628 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC16.29■□□□□ 0.2
CNOT4O95628 PP7080-204ENST00000510714 601 ntTSL 3 BASIC16.29■□□□□ 0.2
CNOT4O95628 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CNOT4O95628 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
CNOT4O95628 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CNOT4O95628 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
CNOT4O95628 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC16.29■□□□□ 0.2
CNOT4O95628 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC16.29■□□□□ 0.2
CNOT4O95628 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC16.29■□□□□ 0.2
CNOT4O95628 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CNOT4O95628 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC16.29■□□□□ 0.2
CNOT4O95628 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CNOT4O95628 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CNOT4O95628 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
CNOT4O95628 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CNOT4O95628 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CNOT4O95628 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CNOT4O95628 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
CNOT4O95628 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
CNOT4O95628 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CNOT4O95628 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC16.28■□□□□ 0.2
CNOT4O95628 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
CNOT4O95628 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC16.28■□□□□ 0.2
CNOT4O95628 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CNOT4O95628 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC16.28■□□□□ 0.2
CNOT4O95628 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC16.28■□□□□ 0.2
CNOT4O95628 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
CNOT4O95628 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CNOT4O95628 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CNOT4O95628 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC16.28■□□□□ 0.2
CNOT4O95628 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
CNOT4O95628 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CNOT4O95628 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CNOT4O95628 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC16.28■□□□□ 0.2
CNOT4O95628 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CNOT4O95628 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CNOT4O95628 HLA-F-220ENST00000434407 884 ntBASIC16.28■□□□□ 0.2
CNOT4O95628 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CNOT4O95628 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC16.28■□□□□ 0.2
CNOT4O95628 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CNOT4O95628 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC16.28■□□□□ 0.2
CNOT4O95628 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC16.28■□□□□ 0.2
CNOT4O95628 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
CNOT4O95628 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
CNOT4O95628 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CNOT4O95628 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CNOT4O95628 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CNOT4O95628 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CNOT4O95628 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CNOT4O95628 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CNOT4O95628 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
CNOT4O95628 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC16.28■□□□□ 0.2
CNOT4O95628 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CNOT4O95628 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC16.27■□□□□ 0.2
CNOT4O95628 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
CNOT4O95628 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
CNOT4O95628 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CNOT4O95628 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
CNOT4O95628 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
CNOT4O95628 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CNOT4O95628 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC16.27■□□□□ 0.2
CNOT4O95628 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CNOT4O95628 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CNOT4O95628 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC16.27■□□□□ 0.2
CNOT4O95628 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
CNOT4O95628 SNCG-201ENST00000348795 684 ntTSL 2 BASIC16.27■□□□□ 0.2
CNOT4O95628 AL450487.1-201ENST00000426799 995 ntBASIC16.27■□□□□ 0.2
CNOT4O95628 DUSP5P1-201ENST00000441325 1139 ntBASIC16.27■□□□□ 0.2
CNOT4O95628 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC16.27■□□□□ 0.2
CNOT4O95628 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC16.27■□□□□ 0.2
CNOT4O95628 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC16.27■□□□□ 0.2
CNOT4O95628 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC16.27■□□□□ 0.2
CNOT4O95628 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC16.27■□□□□ 0.2
CNOT4O95628 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC16.27■□□□□ 0.2
CNOT4O95628 AC008687.5-201ENST00000593746 558 ntBASIC16.27■□□□□ 0.2
CNOT4O95628 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC16.27■□□□□ 0.2
CNOT4O95628 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
CNOT4O95628 AL157888.1-201ENST00000631930 593 ntBASIC16.27■□□□□ 0.2
CNOT4O95628 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
CNOT4O95628 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.19
CNOT4O95628 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
CNOT4O95628 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
CNOT4O95628 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC16.27■□□□□ 0.19
CNOT4O95628 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CNOT4O95628 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
CNOT4O95628 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CNOT4O95628 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CNOT4O95628 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC16.27■□□□□ 0.19
CNOT4O95628 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CNOT4O95628 SNAI3-AS1-205ENST00000568633 2096 ntBASIC16.26■□□□□ 0.19
CNOT4O95628 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CNOT4O95628 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
CNOT4O95628 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
CNOT4O95628 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CNOT4O95628 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms