Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CLDN9O95484 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CLDN9O95484 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CLDN9O95484 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CLDN9O95484 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.74■□□□□ 0.43
CLDN9O95484 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CLDN9O95484 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CLDN9O95484 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
CLDN9O95484 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CLDN9O95484 CYP2D8P-201ENST00000433633 1490 ntBASIC17.74■□□□□ 0.43
CLDN9O95484 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC17.74■□□□□ 0.43
CLDN9O95484 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CLDN9O95484 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC17.74■□□□□ 0.43
CLDN9O95484 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CLDN9O95484 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
CLDN9O95484 PHGDH-209ENST00000641074 1780 ntBASIC17.74■□□□□ 0.43
CLDN9O95484 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CLDN9O95484 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CLDN9O95484 AL096828.2-201ENST00000567259 1965 ntBASIC17.73■□□□□ 0.43
CLDN9O95484 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CLDN9O95484 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CLDN9O95484 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CLDN9O95484 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CLDN9O95484 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CLDN9O95484 INGX-201ENST00000359239 846 ntBASIC17.73■□□□□ 0.43
CLDN9O95484 GRAMD4P1-201ENST00000435181 1110 ntBASIC17.73■□□□□ 0.43
CLDN9O95484 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC17.73■□□□□ 0.43
CLDN9O95484 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CLDN9O95484 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC17.73■□□□□ 0.43
CLDN9O95484 DET1-205ENST00000558413 583 ntTSL 4 BASIC17.73■□□□□ 0.43
CLDN9O95484 MIR3180-4-201ENST00000582223 153 ntBASIC17.73■□□□□ 0.43
CLDN9O95484 AC010947.1-201ENST00000623454 693 ntBASIC17.73■□□□□ 0.43
CLDN9O95484 CD276-203ENST00000537340 2439 ntTSL 2 BASIC17.73■□□□□ 0.43
CLDN9O95484 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC17.73■□□□□ 0.43
CLDN9O95484 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC17.73■□□□□ 0.43
CLDN9O95484 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CLDN9O95484 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CLDN9O95484 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CLDN9O95484 AC008764.6-201ENST00000595909 2069 ntBASIC17.73■□□□□ 0.43
CLDN9O95484 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CLDN9O95484 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLDN9O95484 KRT8P9-201ENST00000558927 1449 ntBASIC17.72■□□□□ 0.43
CLDN9O95484 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CLDN9O95484 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC17.72■□□□□ 0.43
CLDN9O95484 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
CLDN9O95484 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CLDN9O95484 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC17.72■□□□□ 0.43
CLDN9O95484 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLDN9O95484 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
CLDN9O95484 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CLDN9O95484 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CLDN9O95484 GATB-213ENST00000515812 1893 ntTSL 5 BASIC17.72■□□□□ 0.43
CLDN9O95484 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLDN9O95484 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC17.72■□□□□ 0.43
CLDN9O95484 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CLDN9O95484 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CLDN9O95484 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC17.72■□□□□ 0.43
CLDN9O95484 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC17.72■□□□□ 0.43
CLDN9O95484 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC17.72■□□□□ 0.43
CLDN9O95484 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC17.72■□□□□ 0.43
CLDN9O95484 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC17.72■□□□□ 0.43
CLDN9O95484 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC17.72■□□□□ 0.43
CLDN9O95484 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
CLDN9O95484 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLDN9O95484 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CLDN9O95484 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLDN9O95484 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC17.72■□□□□ 0.43
CLDN9O95484 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC17.72■□□□□ 0.43
CLDN9O95484 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CLDN9O95484 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
CLDN9O95484 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CLDN9O95484 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLDN9O95484 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC17.72■□□□□ 0.43
CLDN9O95484 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC17.71■□□□□ 0.43
CLDN9O95484 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC17.71■□□□□ 0.43
CLDN9O95484 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC17.71■□□□□ 0.43
CLDN9O95484 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLDN9O95484 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC17.71■□□□□ 0.43
CLDN9O95484 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC17.71■□□□□ 0.43
CLDN9O95484 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
CLDN9O95484 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC17.71■□□□□ 0.43
CLDN9O95484 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CLDN9O95484 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC17.71■□□□□ 0.43
CLDN9O95484 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CLDN9O95484 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLDN9O95484 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLDN9O95484 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLDN9O95484 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
CLDN9O95484 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLDN9O95484 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLDN9O95484 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLDN9O95484 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLDN9O95484 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLDN9O95484 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC17.71■□□□□ 0.43
CLDN9O95484 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLDN9O95484 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC17.71■□□□□ 0.43
CLDN9O95484 AL512604.3-201ENST00000569583 964 ntBASIC17.71■□□□□ 0.43
CLDN9O95484 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
CLDN9O95484 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLDN9O95484 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms