Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LDB3O75112 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC17.24■□□□□ 0.35
LDB3O75112 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LDB3O75112 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LDB3O75112 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC17.24■□□□□ 0.35
LDB3O75112 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LDB3O75112 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LDB3O75112 SNCG-201ENST00000348795 684 ntTSL 2 BASIC17.24■□□□□ 0.35
LDB3O75112 COPE-203ENST00000351079 907 ntTSL 2 BASIC17.24■□□□□ 0.35
LDB3O75112 GUK1-204ENST00000366721 689 ntTSL 3 BASIC17.24■□□□□ 0.35
LDB3O75112 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
LDB3O75112 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC17.24■□□□□ 0.35
LDB3O75112 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC17.24■□□□□ 0.35
LDB3O75112 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC17.24■□□□□ 0.35
LDB3O75112 REEP1-209ENST00000541910 969 ntTSL 2 BASIC17.24■□□□□ 0.35
LDB3O75112 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC17.24■□□□□ 0.35
LDB3O75112 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC17.24■□□□□ 0.35
LDB3O75112 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC17.24■□□□□ 0.35
LDB3O75112 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
LDB3O75112 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC17.24■□□□□ 0.35
LDB3O75112 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
LDB3O75112 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC17.24■□□□□ 0.35
LDB3O75112 ESPNP-201ENST00000270691 2015 ntBASIC17.24■□□□□ 0.35
LDB3O75112 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LDB3O75112 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
LDB3O75112 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LDB3O75112 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
LDB3O75112 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC17.24■□□□□ 0.35
LDB3O75112 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
LDB3O75112 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
LDB3O75112 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
LDB3O75112 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LDB3O75112 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC17.24■□□□□ 0.35
LDB3O75112 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LDB3O75112 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC17.24■□□□□ 0.35
LDB3O75112 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LDB3O75112 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LDB3O75112 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
LDB3O75112 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
LDB3O75112 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
LDB3O75112 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC17.23■□□□□ 0.35
LDB3O75112 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
LDB3O75112 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LDB3O75112 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LDB3O75112 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LDB3O75112 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
LDB3O75112 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
LDB3O75112 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC17.23■□□□□ 0.35
LDB3O75112 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
LDB3O75112 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LDB3O75112 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
LDB3O75112 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LDB3O75112 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
LDB3O75112 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
LDB3O75112 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LDB3O75112 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LDB3O75112 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LDB3O75112 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LDB3O75112 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LDB3O75112 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC17.23■□□□□ 0.35
LDB3O75112 PVRIG2P-201ENST00000435460 978 ntBASIC17.23■□□□□ 0.35
LDB3O75112 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC17.23■□□□□ 0.35
LDB3O75112 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LDB3O75112 NTF6B-201ENST00000591913 560 ntBASIC17.23■□□□□ 0.35
LDB3O75112 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LDB3O75112 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LDB3O75112 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
LDB3O75112 MED25-212ENST00000618715 1467 ntTSL 5 BASIC17.23■□□□□ 0.35
LDB3O75112 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LDB3O75112 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LDB3O75112 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
LDB3O75112 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
LDB3O75112 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
LDB3O75112 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LDB3O75112 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
LDB3O75112 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
LDB3O75112 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
LDB3O75112 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC17.22■□□□□ 0.35
LDB3O75112 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
LDB3O75112 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LDB3O75112 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC17.22■□□□□ 0.35
LDB3O75112 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC17.22■□□□□ 0.35
LDB3O75112 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC17.22■□□□□ 0.35
LDB3O75112 AL391807.1-203ENST00000604392 2365 ntBASIC17.22■□□□□ 0.35
LDB3O75112 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LDB3O75112 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LDB3O75112 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LDB3O75112 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LDB3O75112 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LDB3O75112 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LDB3O75112 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LDB3O75112 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC17.22■□□□□ 0.35
LDB3O75112 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LDB3O75112 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC17.22■□□□□ 0.35
LDB3O75112 NME3-204ENST00000563498 920 ntTSL 2 BASIC17.22■□□□□ 0.35
LDB3O75112 AL136038.4-201ENST00000603606 1261 ntBASIC17.22■□□□□ 0.35
LDB3O75112 FGF14-AS2-201ENST00000606448 1074 ntBASIC17.22■□□□□ 0.35
LDB3O75112 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC17.22■□□□□ 0.35
LDB3O75112 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC17.22■□□□□ 0.35
LDB3O75112 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms