Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC24.91■■□□□ 1.58
MSH5O43196 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC24.91■■□□□ 1.58
MSH5O43196 AL359918.2-201ENST00000412311 497 ntTSL 3 BASIC24.91■■□□□ 1.58
MSH5O43196 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC24.91■■□□□ 1.58
MSH5O43196 HGNC:18790-207ENST00000505246 973 ntAPPRIS P1 TSL 3 BASIC24.91■■□□□ 1.58
MSH5O43196 ATOX1-206ENST00000522710 591 ntAPPRIS P1 TSL 2 BASIC24.91■■□□□ 1.58
MSH5O43196 AC022616.2-201ENST00000523185 300 ntBASIC24.91■■□□□ 1.58
MSH5O43196 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC24.91■■□□□ 1.58
MSH5O43196 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC24.91■■□□□ 1.58
MSH5O43196 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC24.91■■□□□ 1.58
MSH5O43196 AL023803.3-201ENST00000615559 522 ntBASIC24.91■■□□□ 1.58
MSH5O43196 AL355860.1-201ENST00000636087 1229 ntAPPRIS P1 TSL 2 BASIC24.91■■□□□ 1.58
MSH5O43196 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
MSH5O43196 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
MSH5O43196 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC24.91■■□□□ 1.58
MSH5O43196 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
MSH5O43196 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC24.91■■□□□ 1.58
MSH5O43196 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC24.91■■□□□ 1.58
MSH5O43196 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC24.91■■□□□ 1.58
MSH5O43196 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
MSH5O43196 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
MSH5O43196 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC24.91■■□□□ 1.58
MSH5O43196 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC24.91■■□□□ 1.58
MSH5O43196 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC24.9■■□□□ 1.58
MSH5O43196 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC24.9■■□□□ 1.58
MSH5O43196 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
MSH5O43196 AL359641.1-201ENST00000412509 1558 ntBASIC24.9■■□□□ 1.58
MSH5O43196 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC24.9■■□□□ 1.58
MSH5O43196 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
MSH5O43196 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC24.9■■□□□ 1.58
MSH5O43196 PTPA-216ENST00000432651 857 ntTSL 2 BASIC24.9■■□□□ 1.58
MSH5O43196 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC24.9■■□□□ 1.58
MSH5O43196 AC090541.1-201ENST00000519803 467 ntTSL 3 BASIC24.9■■□□□ 1.58
MSH5O43196 AL353719.1-201ENST00000566847 864 ntBASIC24.9■■□□□ 1.58
MSH5O43196 ZEB2P1-202ENST00000572816 902 ntTSL 5 BASIC24.9■■□□□ 1.58
MSH5O43196 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC24.9■■□□□ 1.58
MSH5O43196 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC24.9■■□□□ 1.58
MSH5O43196 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
MSH5O43196 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC24.9■■□□□ 1.58
MSH5O43196 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC24.9■■□□□ 1.58
MSH5O43196 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
MSH5O43196 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
MSH5O43196 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
MSH5O43196 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC24.89■■□□□ 1.58
MSH5O43196 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC24.89■■□□□ 1.58
MSH5O43196 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC24.89■■□□□ 1.58
MSH5O43196 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC24.89■■□□□ 1.58
MSH5O43196 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC24.89■■□□□ 1.58
MSH5O43196 C9orf85-203ENST00000377031 1107 ntTSL 3 BASIC24.89■■□□□ 1.58
MSH5O43196 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
MSH5O43196 SFR1P2-201ENST00000421841 730 ntBASIC24.89■■□□□ 1.58
MSH5O43196 AL133417.1-201ENST00000425290 688 ntTSL 5 BASIC24.89■■□□□ 1.58
MSH5O43196 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC24.89■■□□□ 1.58
MSH5O43196 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC24.89■■□□□ 1.58
MSH5O43196 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC24.89■■□□□ 1.58
MSH5O43196 AC012454.1-201ENST00000443948 995 ntBASIC24.89■■□□□ 1.58
MSH5O43196 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC24.89■■□□□ 1.58
MSH5O43196 AC137794.1-201ENST00000509185 914 ntTSL 5 BASIC24.89■■□□□ 1.58
MSH5O43196 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC24.89■■□□□ 1.58
MSH5O43196 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC24.89■■□□□ 1.58
MSH5O43196 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC24.89■■□□□ 1.58
MSH5O43196 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC24.89■■□□□ 1.58
MSH5O43196 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC24.89■■□□□ 1.57
MSH5O43196 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC24.89■■□□□ 1.57
MSH5O43196 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC24.89■■□□□ 1.57
MSH5O43196 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC24.88■■□□□ 1.57
MSH5O43196 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
MSH5O43196 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC24.88■■□□□ 1.57
MSH5O43196 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC24.88■■□□□ 1.57
MSH5O43196 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
MSH5O43196 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC24.88■■□□□ 1.57
MSH5O43196 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
MSH5O43196 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
MSH5O43196 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC24.88■■□□□ 1.57
MSH5O43196 AC135050.7-201ENST00000624508 2218 ntBASIC24.88■■□□□ 1.57
MSH5O43196 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
MSH5O43196 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC24.88■■□□□ 1.57
MSH5O43196 CFLAR-212ENST00000440180 1198 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
MSH5O43196 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC24.88■■□□□ 1.57
MSH5O43196 VBP1-203ENST00000535916 944 ntTSL 2 BASIC24.88■■□□□ 1.57
MSH5O43196 AC007570.1-201ENST00000539987 603 ntTSL 3 BASIC24.88■■□□□ 1.57
MSH5O43196 LINC02207-201ENST00000554530 1256 ntTSL 5 BASIC24.88■■□□□ 1.57
MSH5O43196 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC24.88■■□□□ 1.57
MSH5O43196 AL133507.1-201ENST00000605269 557 ntBASIC24.88■■□□□ 1.57
MSH5O43196 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
MSH5O43196 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC24.88■■□□□ 1.57
MSH5O43196 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC24.88■■□□□ 1.57
MSH5O43196 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC24.88■■□□□ 1.57
MSH5O43196 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC24.88■■□□□ 1.57
MSH5O43196 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
MSH5O43196 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
MSH5O43196 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC24.88■■□□□ 1.57
MSH5O43196 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC24.87■■□□□ 1.57
MSH5O43196 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
MSH5O43196 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC24.87■■□□□ 1.57
MSH5O43196 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC24.87■■□□□ 1.57
MSH5O43196 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
MSH5O43196 AC068880.1-201ENST00000507289 2297 ntBASIC24.87■■□□□ 1.57
MSH5O43196 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC24.87■■□□□ 1.57
MSH5O43196 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC24.87■■□□□ 1.57
Retrieved 100 of 98,524 protein–RNA pairs in 88 ms