Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 PHGDH-209ENST00000641074 1780 ntBASIC20.54■□□□□ 0.88
MSH4O15457 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
MSH4O15457 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
MSH4O15457 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
MSH4O15457 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
MSH4O15457 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
MSH4O15457 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
MSH4O15457 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC20.53■□□□□ 0.88
MSH4O15457 BCL10-202ENST00000620248 774 ntTSL 5 BASIC20.53■□□□□ 0.88
MSH4O15457 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC20.53■□□□□ 0.88
MSH4O15457 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
MSH4O15457 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
MSH4O15457 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
MSH4O15457 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
MSH4O15457 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
MSH4O15457 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC20.53■□□□□ 0.88
MSH4O15457 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC20.53■□□□□ 0.88
MSH4O15457 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC20.53■□□□□ 0.88
MSH4O15457 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
MSH4O15457 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
MSH4O15457 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
MSH4O15457 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
MSH4O15457 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
MSH4O15457 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
MSH4O15457 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
MSH4O15457 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
MSH4O15457 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
MSH4O15457 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC20.52■□□□□ 0.88
MSH4O15457 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
MSH4O15457 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
MSH4O15457 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
MSH4O15457 CHCHD2P8-201ENST00000429873 447 ntBASIC20.52■□□□□ 0.88
MSH4O15457 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC20.52■□□□□ 0.88
MSH4O15457 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
MSH4O15457 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC20.52■□□□□ 0.88
MSH4O15457 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
MSH4O15457 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC20.52■□□□□ 0.88
MSH4O15457 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC20.52■□□□□ 0.88
MSH4O15457 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
MSH4O15457 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC20.52■□□□□ 0.88
MSH4O15457 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
MSH4O15457 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.87
MSH4O15457 LINC00167-201ENST00000530583 1419 ntBASIC20.52■□□□□ 0.87
MSH4O15457 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
MSH4O15457 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
MSH4O15457 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
MSH4O15457 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
MSH4O15457 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC20.51■□□□□ 0.87
MSH4O15457 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
MSH4O15457 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC20.51■□□□□ 0.87
MSH4O15457 LINC00602-201ENST00000629776 2065 ntBASIC20.51■□□□□ 0.87
MSH4O15457 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
MSH4O15457 ATP5G2P1-201ENST00000433580 426 ntBASIC20.51■□□□□ 0.87
MSH4O15457 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC20.51■□□□□ 0.87
MSH4O15457 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC20.51■□□□□ 0.87
MSH4O15457 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC20.51■□□□□ 0.87
MSH4O15457 MIR3180-1-201ENST00000580374 94 ntBASIC20.51■□□□□ 0.87
MSH4O15457 MIR3180-3-201ENST00000584616 94 ntBASIC20.51■□□□□ 0.87
MSH4O15457 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC20.51■□□□□ 0.87
MSH4O15457 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
MSH4O15457 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
MSH4O15457 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC20.51■□□□□ 0.87
MSH4O15457 AC135776.1-201ENST00000319817 2481 ntBASIC20.51■□□□□ 0.87
MSH4O15457 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
MSH4O15457 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
MSH4O15457 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC20.51■□□□□ 0.87
MSH4O15457 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC20.51■□□□□ 0.87
MSH4O15457 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC20.51■□□□□ 0.87
MSH4O15457 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
MSH4O15457 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
MSH4O15457 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
MSH4O15457 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
MSH4O15457 AC093677.2-201ENST00000600169 1863 ntBASIC20.5■□□□□ 0.87
MSH4O15457 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
MSH4O15457 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC20.5■□□□□ 0.87
MSH4O15457 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
MSH4O15457 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC20.5■□□□□ 0.87
MSH4O15457 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC20.5■□□□□ 0.87
MSH4O15457 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC20.5■□□□□ 0.87
MSH4O15457 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC20.5■□□□□ 0.87
MSH4O15457 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
MSH4O15457 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
MSH4O15457 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
MSH4O15457 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
MSH4O15457 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
MSH4O15457 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
MSH4O15457 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
MSH4O15457 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
MSH4O15457 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC20.5■□□□□ 0.87
MSH4O15457 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
MSH4O15457 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
MSH4O15457 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC20.49■□□□□ 0.87
MSH4O15457 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC20.49■□□□□ 0.87
MSH4O15457 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MSH4O15457 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MSH4O15457 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MSH4O15457 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
MSH4O15457 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC20.49■□□□□ 0.87
MSH4O15457 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MSH4O15457 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms