Protein–RNA interactions for Protein: O00203

AP3B1, AP-3 complex subunit beta-1, humanhuman

Predictions only

Length 1,094 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP3B1O00203 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC18.53■□□□□ 0.56
AP3B1O00203 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
AP3B1O00203 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
AP3B1O00203 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
AP3B1O00203 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
AP3B1O00203 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
AP3B1O00203 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
AP3B1O00203 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC18.53■□□□□ 0.56
AP3B1O00203 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
AP3B1O00203 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
AP3B1O00203 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
AP3B1O00203 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
AP3B1O00203 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC18.53■□□□□ 0.56
AP3B1O00203 NAPSB-206ENST00000562112 1266 ntBASIC18.53■□□□□ 0.56
AP3B1O00203 MNT-208ENST00000575394 606 ntTSL 4 BASIC18.53■□□□□ 0.56
AP3B1O00203 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC18.53■□□□□ 0.56
AP3B1O00203 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
AP3B1O00203 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
AP3B1O00203 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
AP3B1O00203 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC18.53■□□□□ 0.56
AP3B1O00203 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
AP3B1O00203 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
AP3B1O00203 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
AP3B1O00203 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
AP3B1O00203 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
AP3B1O00203 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
AP3B1O00203 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC18.52■□□□□ 0.56
AP3B1O00203 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
AP3B1O00203 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
AP3B1O00203 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC18.52■□□□□ 0.56
AP3B1O00203 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
AP3B1O00203 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
AP3B1O00203 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
AP3B1O00203 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
AP3B1O00203 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC18.52■□□□□ 0.56
AP3B1O00203 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
AP3B1O00203 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
AP3B1O00203 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
AP3B1O00203 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC18.52■□□□□ 0.56
AP3B1O00203 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC18.52■□□□□ 0.56
AP3B1O00203 GPX4-207ENST00000589115 812 ntTSL 2 BASIC18.52■□□□□ 0.56
AP3B1O00203 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC18.52■□□□□ 0.56
AP3B1O00203 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC18.52■□□□□ 0.56
AP3B1O00203 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
AP3B1O00203 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
AP3B1O00203 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC18.52■□□□□ 0.56
AP3B1O00203 PHGDH-209ENST00000641074 1780 ntBASIC18.52■□□□□ 0.55
AP3B1O00203 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
AP3B1O00203 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
AP3B1O00203 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
AP3B1O00203 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.55
AP3B1O00203 REXO1L9P-201ENST00000604264 2108 ntBASIC18.52■□□□□ 0.55
AP3B1O00203 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.55
AP3B1O00203 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
AP3B1O00203 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC18.52■□□□□ 0.55
AP3B1O00203 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
AP3B1O00203 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC18.51■□□□□ 0.55
AP3B1O00203 AL096828.2-201ENST00000567259 1965 ntBASIC18.51■□□□□ 0.55
AP3B1O00203 UROS-202ENST00000368778 1556 ntTSL 2 BASIC18.51■□□□□ 0.55
AP3B1O00203 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
AP3B1O00203 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC18.51■□□□□ 0.55
AP3B1O00203 AC008764.6-201ENST00000595909 2069 ntBASIC18.51■□□□□ 0.55
AP3B1O00203 LETM1P2-201ENST00000597330 2178 ntBASIC18.51■□□□□ 0.55
AP3B1O00203 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
AP3B1O00203 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
AP3B1O00203 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC18.51■□□□□ 0.55
AP3B1O00203 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC18.51■□□□□ 0.55
AP3B1O00203 MMP23A-201ENST00000234610 1017 ntBASIC18.51■□□□□ 0.55
AP3B1O00203 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC18.51■□□□□ 0.55
AP3B1O00203 AP000523.1-201ENST00000398242 1049 ntBASIC18.51■□□□□ 0.55
AP3B1O00203 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC18.51■□□□□ 0.55
AP3B1O00203 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
AP3B1O00203 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
AP3B1O00203 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
AP3B1O00203 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC18.51■□□□□ 0.55
AP3B1O00203 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
AP3B1O00203 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
AP3B1O00203 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
AP3B1O00203 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
AP3B1O00203 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC18.51■□□□□ 0.55
AP3B1O00203 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
AP3B1O00203 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
AP3B1O00203 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
AP3B1O00203 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC18.51■□□□□ 0.55
AP3B1O00203 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC18.5■□□□□ 0.55
AP3B1O00203 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
AP3B1O00203 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
AP3B1O00203 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
AP3B1O00203 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
AP3B1O00203 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
AP3B1O00203 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC18.5■□□□□ 0.55
AP3B1O00203 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
AP3B1O00203 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
AP3B1O00203 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC18.5■□□□□ 0.55
AP3B1O00203 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC18.5■□□□□ 0.55
AP3B1O00203 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
AP3B1O00203 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
AP3B1O00203 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
AP3B1O00203 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
AP3B1O00203 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms