Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHB3Q9Y5E6 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHB3Q9Y5E6 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
PCDHB3Q9Y5E6 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHB3Q9Y5E6 FZD10-202ENST00000539839 3282 ntBASIC17.98■□□□□ 0.47
PCDHB3Q9Y5E6 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC17.98■□□□□ 0.47
PCDHB3Q9Y5E6 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHB3Q9Y5E6 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHB3Q9Y5E6 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
PCDHB3Q9Y5E6 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHB3Q9Y5E6 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC17.98■□□□□ 0.47
PCDHB3Q9Y5E6 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
PCDHB3Q9Y5E6 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC17.98■□□□□ 0.47
PCDHB3Q9Y5E6 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC17.98■□□□□ 0.47
PCDHB3Q9Y5E6 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC17.98■□□□□ 0.47
PCDHB3Q9Y5E6 AL441883.1-201ENST00000566170 1045 ntBASIC17.98■□□□□ 0.47
PCDHB3Q9Y5E6 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC17.98■□□□□ 0.47
PCDHB3Q9Y5E6 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC17.98■□□□□ 0.47
PCDHB3Q9Y5E6 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC17.98■□□□□ 0.47
PCDHB3Q9Y5E6 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC17.98■□□□□ 0.47
PCDHB3Q9Y5E6 AL023973.1-201ENST00000624619 620 ntBASIC17.98■□□□□ 0.47
PCDHB3Q9Y5E6 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHB3Q9Y5E6 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC17.98■□□□□ 0.47
PCDHB3Q9Y5E6 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHB3Q9Y5E6 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC17.98■□□□□ 0.47
PCDHB3Q9Y5E6 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHB3Q9Y5E6 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC17.98■□□□□ 0.47
PCDHB3Q9Y5E6 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHB3Q9Y5E6 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHB3Q9Y5E6 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHB3Q9Y5E6 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC17.98■□□□□ 0.47
PCDHB3Q9Y5E6 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
PCDHB3Q9Y5E6 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHB3Q9Y5E6 GOLGA6L5P-202ENST00000515341 1828 ntBASIC17.98■□□□□ 0.47
PCDHB3Q9Y5E6 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHB3Q9Y5E6 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDHB3Q9Y5E6 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
PCDHB3Q9Y5E6 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
PCDHB3Q9Y5E6 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
PCDHB3Q9Y5E6 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PCDHB3Q9Y5E6 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PCDHB3Q9Y5E6 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC17.97■□□□□ 0.47
PCDHB3Q9Y5E6 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC17.97■□□□□ 0.47
PCDHB3Q9Y5E6 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC17.97■□□□□ 0.47
PCDHB3Q9Y5E6 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
PCDHB3Q9Y5E6 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
PCDHB3Q9Y5E6 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PCDHB3Q9Y5E6 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
PCDHB3Q9Y5E6 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC17.97■□□□□ 0.47
PCDHB3Q9Y5E6 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
PCDHB3Q9Y5E6 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
PCDHB3Q9Y5E6 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
PCDHB3Q9Y5E6 IER3-202ENST00000376377 1350 ntBASIC17.97■□□□□ 0.47
PCDHB3Q9Y5E6 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC17.97■□□□□ 0.47
PCDHB3Q9Y5E6 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
PCDHB3Q9Y5E6 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PCDHB3Q9Y5E6 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC17.97■□□□□ 0.47
PCDHB3Q9Y5E6 AC009947.2-201ENST00000444014 672 ntBASIC17.97■□□□□ 0.47
PCDHB3Q9Y5E6 AL671277.2-201ENST00000458060 996 ntBASIC17.97■□□□□ 0.47
PCDHB3Q9Y5E6 AL359075.1-203ENST00000462729 1002 ntBASIC17.97■□□□□ 0.47
PCDHB3Q9Y5E6 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
PCDHB3Q9Y5E6 NT5C-210ENST00000582160 860 ntTSL 2 BASIC17.97■□□□□ 0.47
PCDHB3Q9Y5E6 MIR4674-201ENST00000582457 87 ntBASIC17.97■□□□□ 0.47
PCDHB3Q9Y5E6 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PCDHB3Q9Y5E6 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PCDHB3Q9Y5E6 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC17.97■□□□□ 0.47
PCDHB3Q9Y5E6 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
PCDHB3Q9Y5E6 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
PCDHB3Q9Y5E6 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC17.97■□□□□ 0.47
PCDHB3Q9Y5E6 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
PCDHB3Q9Y5E6 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC17.97■□□□□ 0.47
PCDHB3Q9Y5E6 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.96■□□□□ 0.47
PCDHB3Q9Y5E6 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHB3Q9Y5E6 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC17.96■□□□□ 0.47
PCDHB3Q9Y5E6 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHB3Q9Y5E6 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHB3Q9Y5E6 COBL-210ENST00000632460 1941 ntTSL 5 BASIC17.96■□□□□ 0.47
PCDHB3Q9Y5E6 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHB3Q9Y5E6 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHB3Q9Y5E6 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC17.96■□□□□ 0.47
PCDHB3Q9Y5E6 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
PCDHB3Q9Y5E6 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHB3Q9Y5E6 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHB3Q9Y5E6 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
PCDHB3Q9Y5E6 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHB3Q9Y5E6 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC17.96■□□□□ 0.47
PCDHB3Q9Y5E6 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHB3Q9Y5E6 Telomerase-vert.1-201ENST00000363312 438 ntBASIC17.96■□□□□ 0.47
PCDHB3Q9Y5E6 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHB3Q9Y5E6 IFNA4-201ENST00000421715 978 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
PCDHB3Q9Y5E6 DAP-202ENST00000432074 1048 ntTSL 2 BASIC17.96■□□□□ 0.47
PCDHB3Q9Y5E6 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC17.96■□□□□ 0.47
PCDHB3Q9Y5E6 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHB3Q9Y5E6 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC17.96■□□□□ 0.47
PCDHB3Q9Y5E6 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHB3Q9Y5E6 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
PCDHB3Q9Y5E6 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHB3Q9Y5E6 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHB3Q9Y5E6 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC17.96■□□□□ 0.47
PCDHB3Q9Y5E6 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms