Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIMA1Q9UHB6 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIMA1Q9UHB6 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIMA1Q9UHB6 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC20.05■□□□□ 0.8
LIMA1Q9UHB6 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
LIMA1Q9UHB6 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
LIMA1Q9UHB6 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LIMA1Q9UHB6 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIMA1Q9UHB6 EML3-212ENST00000494176 2901 ntTSL 2 BASIC20.05■□□□□ 0.8
LIMA1Q9UHB6 EML3-216ENST00000529309 2909 ntTSL 2 BASIC20.05■□□□□ 0.8
LIMA1Q9UHB6 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIMA1Q9UHB6 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC20.05■□□□□ 0.8
LIMA1Q9UHB6 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
LIMA1Q9UHB6 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
LIMA1Q9UHB6 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIMA1Q9UHB6 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC20.05■□□□□ 0.8
LIMA1Q9UHB6 PEX7-202ENST00000367756 680 ntTSL 3 BASIC20.05■□□□□ 0.8
LIMA1Q9UHB6 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIMA1Q9UHB6 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC20.05■□□□□ 0.8
LIMA1Q9UHB6 AC012618.2-201ENST00000428058 849 ntBASIC20.05■□□□□ 0.8
LIMA1Q9UHB6 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC20.05■□□□□ 0.8
LIMA1Q9UHB6 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC20.05■□□□□ 0.8
LIMA1Q9UHB6 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC20.05■□□□□ 0.8
LIMA1Q9UHB6 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC20.05■□□□□ 0.8
LIMA1Q9UHB6 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC20.05■□□□□ 0.8
LIMA1Q9UHB6 AC233702.5-201ENST00000584107 538 ntBASIC20.05■□□□□ 0.8
LIMA1Q9UHB6 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LIMA1Q9UHB6 KRT18P55-202ENST00000578578 1546 ntBASIC20.05■□□□□ 0.8
LIMA1Q9UHB6 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC20.05■□□□□ 0.8
LIMA1Q9UHB6 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIMA1Q9UHB6 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIMA1Q9UHB6 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC20.05■□□□□ 0.8
LIMA1Q9UHB6 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIMA1Q9UHB6 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIMA1Q9UHB6 AC012317.2-201ENST00000623305 2251 ntBASIC20.05■□□□□ 0.8
LIMA1Q9UHB6 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIMA1Q9UHB6 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
LIMA1Q9UHB6 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIMA1Q9UHB6 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC20.04■□□□□ 0.8
LIMA1Q9UHB6 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
LIMA1Q9UHB6 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC20.04■□□□□ 0.8
LIMA1Q9UHB6 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIMA1Q9UHB6 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LIMA1Q9UHB6 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIMA1Q9UHB6 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LIMA1Q9UHB6 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC20.04■□□□□ 0.8
LIMA1Q9UHB6 KRT18P23-201ENST00000435622 1283 ntBASIC20.04■□□□□ 0.8
LIMA1Q9UHB6 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC20.04■□□□□ 0.8
LIMA1Q9UHB6 PENK-204ENST00000518770 863 ntTSL 2 BASIC20.04■□□□□ 0.8
LIMA1Q9UHB6 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LIMA1Q9UHB6 AC142381.4-202ENST00000563973 229 ntBASIC20.04■□□□□ 0.8
LIMA1Q9UHB6 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC20.04■□□□□ 0.8
LIMA1Q9UHB6 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC20.04■□□□□ 0.8
LIMA1Q9UHB6 GRAMD4P8-201ENST00000605465 1115 ntBASIC20.04■□□□□ 0.8
LIMA1Q9UHB6 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIMA1Q9UHB6 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIMA1Q9UHB6 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIMA1Q9UHB6 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LIMA1Q9UHB6 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIMA1Q9UHB6 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIMA1Q9UHB6 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC20.03■□□□□ 0.8
LIMA1Q9UHB6 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC20.03■□□□□ 0.8
LIMA1Q9UHB6 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC20.03■□□□□ 0.8
LIMA1Q9UHB6 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC20.03■□□□□ 0.8
LIMA1Q9UHB6 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC20.03■□□□□ 0.8
LIMA1Q9UHB6 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIMA1Q9UHB6 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
LIMA1Q9UHB6 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
LIMA1Q9UHB6 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
LIMA1Q9UHB6 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIMA1Q9UHB6 TSPY20P-201ENST00000450910 630 ntBASIC20.03■□□□□ 0.8
LIMA1Q9UHB6 AC098590.1-201ENST00000468126 897 ntBASIC20.03■□□□□ 0.8
LIMA1Q9UHB6 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
LIMA1Q9UHB6 DENND3-207ENST00000518347 850 ntTSL 2 BASIC20.03■□□□□ 0.8
LIMA1Q9UHB6 REXO2-216ENST00000544196 452 ntTSL 3 BASIC20.03■□□□□ 0.8
LIMA1Q9UHB6 WWOX-216ENST00000569818 525 ntBASIC20.03■□□□□ 0.8
LIMA1Q9UHB6 CR769767.2-201ENST00000622735 460 ntBASIC20.03■□□□□ 0.8
LIMA1Q9UHB6 AL049637.2-201ENST00000641778 930 ntBASIC20.03■□□□□ 0.8
LIMA1Q9UHB6 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIMA1Q9UHB6 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC20.03■□□□□ 0.8
LIMA1Q9UHB6 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
LIMA1Q9UHB6 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIMA1Q9UHB6 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIMA1Q9UHB6 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
LIMA1Q9UHB6 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIMA1Q9UHB6 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
LIMA1Q9UHB6 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC20.03■□□□□ 0.8
LIMA1Q9UHB6 FST-202ENST00000396947 2538 ntTSL 5 BASIC20.03■□□□□ 0.8
LIMA1Q9UHB6 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
LIMA1Q9UHB6 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIMA1Q9UHB6 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIMA1Q9UHB6 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
LIMA1Q9UHB6 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIMA1Q9UHB6 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LIMA1Q9UHB6 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LIMA1Q9UHB6 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC20.02■□□□□ 0.8
LIMA1Q9UHB6 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
LIMA1Q9UHB6 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LIMA1Q9UHB6 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LIMA1Q9UHB6 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms