Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC18.9■□□□□ 0.62
USP29Q9HBJ7 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
USP29Q9HBJ7 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
USP29Q9HBJ7 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC18.9■□□□□ 0.62
USP29Q9HBJ7 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
USP29Q9HBJ7 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC18.9■□□□□ 0.62
USP29Q9HBJ7 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC18.9■□□□□ 0.62
USP29Q9HBJ7 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
USP29Q9HBJ7 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP29Q9HBJ7 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC18.9■□□□□ 0.62
USP29Q9HBJ7 AL512604.3-201ENST00000569583 964 ntBASIC18.9■□□□□ 0.62
USP29Q9HBJ7 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP29Q9HBJ7 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC18.9■□□□□ 0.62
USP29Q9HBJ7 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
USP29Q9HBJ7 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC18.9■□□□□ 0.62
USP29Q9HBJ7 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP29Q9HBJ7 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
USP29Q9HBJ7 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP29Q9HBJ7 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
USP29Q9HBJ7 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP29Q9HBJ7 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC18.9■□□□□ 0.62
USP29Q9HBJ7 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP29Q9HBJ7 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC18.9■□□□□ 0.62
USP29Q9HBJ7 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC18.89■□□□□ 0.62
USP29Q9HBJ7 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.62
USP29Q9HBJ7 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.62
USP29Q9HBJ7 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
USP29Q9HBJ7 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC18.89■□□□□ 0.61
USP29Q9HBJ7 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC18.89■□□□□ 0.61
USP29Q9HBJ7 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP29Q9HBJ7 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP29Q9HBJ7 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
USP29Q9HBJ7 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP29Q9HBJ7 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP29Q9HBJ7 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC18.89■□□□□ 0.61
USP29Q9HBJ7 ILF2-202ENST00000368681 726 ntTSL 2 BASIC18.89■□□□□ 0.61
USP29Q9HBJ7 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC18.89■□□□□ 0.61
USP29Q9HBJ7 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC18.89■□□□□ 0.61
USP29Q9HBJ7 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC18.89■□□□□ 0.61
USP29Q9HBJ7 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
USP29Q9HBJ7 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
USP29Q9HBJ7 AC067852.2-201ENST00000590513 2313 ntBASIC18.89■□□□□ 0.61
USP29Q9HBJ7 UROS-202ENST00000368778 1556 ntTSL 2 BASIC18.89■□□□□ 0.61
USP29Q9HBJ7 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP29Q9HBJ7 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC18.88■□□□□ 0.61
USP29Q9HBJ7 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC18.88■□□□□ 0.61
USP29Q9HBJ7 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
USP29Q9HBJ7 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP29Q9HBJ7 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
USP29Q9HBJ7 REXO1L9P-201ENST00000604264 2108 ntBASIC18.88■□□□□ 0.61
USP29Q9HBJ7 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP29Q9HBJ7 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP29Q9HBJ7 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP29Q9HBJ7 INGX-201ENST00000359239 846 ntBASIC18.88■□□□□ 0.61
USP29Q9HBJ7 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP29Q9HBJ7 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
USP29Q9HBJ7 AC063952.2-201ENST00000498792 1227 ntBASIC18.88■□□□□ 0.61
USP29Q9HBJ7 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC18.88■□□□□ 0.61
USP29Q9HBJ7 AC022616.7-201ENST00000525383 220 ntBASIC18.88■□□□□ 0.61
USP29Q9HBJ7 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
USP29Q9HBJ7 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC18.88■□□□□ 0.61
USP29Q9HBJ7 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
USP29Q9HBJ7 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
USP29Q9HBJ7 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
USP29Q9HBJ7 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC18.88■□□□□ 0.61
USP29Q9HBJ7 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC18.88■□□□□ 0.61
USP29Q9HBJ7 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC18.88■□□□□ 0.61
USP29Q9HBJ7 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
USP29Q9HBJ7 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC18.88■□□□□ 0.61
USP29Q9HBJ7 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
USP29Q9HBJ7 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
USP29Q9HBJ7 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP29Q9HBJ7 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP29Q9HBJ7 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP29Q9HBJ7 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
USP29Q9HBJ7 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP29Q9HBJ7 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
USP29Q9HBJ7 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP29Q9HBJ7 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP29Q9HBJ7 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP29Q9HBJ7 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP29Q9HBJ7 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
USP29Q9HBJ7 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
USP29Q9HBJ7 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
USP29Q9HBJ7 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
USP29Q9HBJ7 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USP29Q9HBJ7 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC18.87■□□□□ 0.61
USP29Q9HBJ7 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC18.87■□□□□ 0.61
USP29Q9HBJ7 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC18.87■□□□□ 0.61
USP29Q9HBJ7 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC18.87■□□□□ 0.61
USP29Q9HBJ7 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC18.87■□□□□ 0.61
USP29Q9HBJ7 GMCL1P1-201ENST00000463439 1581 ntBASIC18.87■□□□□ 0.61
USP29Q9HBJ7 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC18.87■□□□□ 0.61
USP29Q9HBJ7 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
USP29Q9HBJ7 KRT8P7-201ENST00000533003 1432 ntBASIC18.87■□□□□ 0.61
USP29Q9HBJ7 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
USP29Q9HBJ7 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC18.87■□□□□ 0.61
USP29Q9HBJ7 AC138028.4-201ENST00000564984 1845 ntBASIC18.87■□□□□ 0.61
USP29Q9HBJ7 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
USP29Q9HBJ7 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms