Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
PAAF1Q9BRP4 LINC00602-201ENST00000629776 2065 ntBASIC19.52■□□□□ 0.72
PAAF1Q9BRP4 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
PAAF1Q9BRP4 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
PAAF1Q9BRP4 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC19.52■□□□□ 0.72
PAAF1Q9BRP4 DFFB-203ENST00000341385 572 ntTSL 5 BASIC19.52■□□□□ 0.72
PAAF1Q9BRP4 NUS1P2-201ENST00000417358 873 ntBASIC19.52■□□□□ 0.72
PAAF1Q9BRP4 FAAHP1-202ENST00000446499 1238 ntBASIC19.52■□□□□ 0.72
PAAF1Q9BRP4 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC19.52■□□□□ 0.72
PAAF1Q9BRP4 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC19.52■□□□□ 0.72
PAAF1Q9BRP4 CCNC-219ENST00000627680 896 ntTSL 5 BASIC19.52■□□□□ 0.72
PAAF1Q9BRP4 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
PAAF1Q9BRP4 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
PAAF1Q9BRP4 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
PAAF1Q9BRP4 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC19.52■□□□□ 0.71
PAAF1Q9BRP4 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
PAAF1Q9BRP4 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC19.52■□□□□ 0.71
PAAF1Q9BRP4 AL031598.1-201ENST00000561511 1773 ntBASIC19.52■□□□□ 0.71
PAAF1Q9BRP4 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
PAAF1Q9BRP4 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
PAAF1Q9BRP4 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PAAF1Q9BRP4 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
PAAF1Q9BRP4 KRT8P10-201ENST00000450021 1447 ntBASIC19.51■□□□□ 0.71
PAAF1Q9BRP4 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
PAAF1Q9BRP4 CROCCP3-202ENST00000420820 1947 ntBASIC19.51■□□□□ 0.71
PAAF1Q9BRP4 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC19.51■□□□□ 0.71
PAAF1Q9BRP4 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
PAAF1Q9BRP4 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PAAF1Q9BRP4 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PAAF1Q9BRP4 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC19.51■□□□□ 0.71
PAAF1Q9BRP4 AKR1C7P-201ENST00000305623 895 ntBASIC19.51■□□□□ 0.71
PAAF1Q9BRP4 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PAAF1Q9BRP4 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PAAF1Q9BRP4 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC19.51■□□□□ 0.71
PAAF1Q9BRP4 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC19.51■□□□□ 0.71
PAAF1Q9BRP4 KRT16P4-201ENST00000453883 522 ntBASIC19.51■□□□□ 0.71
PAAF1Q9BRP4 BNIP3P18-201ENST00000593976 575 ntBASIC19.51■□□□□ 0.71
PAAF1Q9BRP4 GXYLT1P4-201ENST00000613576 1192 ntBASIC19.51■□□□□ 0.71
PAAF1Q9BRP4 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC19.51■□□□□ 0.71
PAAF1Q9BRP4 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
PAAF1Q9BRP4 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
PAAF1Q9BRP4 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC19.51■□□□□ 0.71
PAAF1Q9BRP4 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
PAAF1Q9BRP4 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PAAF1Q9BRP4 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PAAF1Q9BRP4 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PAAF1Q9BRP4 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
PAAF1Q9BRP4 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC19.5■□□□□ 0.71
PAAF1Q9BRP4 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
PAAF1Q9BRP4 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PAAF1Q9BRP4 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
PAAF1Q9BRP4 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
PAAF1Q9BRP4 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PAAF1Q9BRP4 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PAAF1Q9BRP4 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PAAF1Q9BRP4 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PAAF1Q9BRP4 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
PAAF1Q9BRP4 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
PAAF1Q9BRP4 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PAAF1Q9BRP4 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
PAAF1Q9BRP4 TSPY12P-201ENST00000421279 868 ntBASIC19.5■□□□□ 0.71
PAAF1Q9BRP4 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC19.5■□□□□ 0.71
PAAF1Q9BRP4 MINOS1P3-201ENST00000457048 203 ntBASIC19.5■□□□□ 0.71
PAAF1Q9BRP4 AC068472.1-201ENST00000474589 881 ntBASIC19.5■□□□□ 0.71
PAAF1Q9BRP4 VENTXP7-201ENST00000475503 772 ntBASIC19.5■□□□□ 0.71
PAAF1Q9BRP4 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC19.5■□□□□ 0.71
PAAF1Q9BRP4 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC19.5■□□□□ 0.71
PAAF1Q9BRP4 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC19.5■□□□□ 0.71
PAAF1Q9BRP4 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC19.5■□□□□ 0.71
PAAF1Q9BRP4 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC19.5■□□□□ 0.71
PAAF1Q9BRP4 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC19.5■□□□□ 0.71
PAAF1Q9BRP4 AC005336.2-201ENST00000593183 939 ntBASIC19.5■□□□□ 0.71
PAAF1Q9BRP4 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
PAAF1Q9BRP4 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PAAF1Q9BRP4 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
PAAF1Q9BRP4 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
PAAF1Q9BRP4 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
PAAF1Q9BRP4 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC19.49■□□□□ 0.71
PAAF1Q9BRP4 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
PAAF1Q9BRP4 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC19.49■□□□□ 0.71
PAAF1Q9BRP4 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
PAAF1Q9BRP4 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PAAF1Q9BRP4 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC19.49■□□□□ 0.71
PAAF1Q9BRP4 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
PAAF1Q9BRP4 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC19.49■□□□□ 0.71
PAAF1Q9BRP4 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
PAAF1Q9BRP4 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PAAF1Q9BRP4 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PAAF1Q9BRP4 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
PAAF1Q9BRP4 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PAAF1Q9BRP4 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
PAAF1Q9BRP4 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PAAF1Q9BRP4 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC19.49■□□□□ 0.71
PAAF1Q9BRP4 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PAAF1Q9BRP4 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PAAF1Q9BRP4 DDT-203ENST00000403754 569 ntTSL 3 BASIC19.49■□□□□ 0.71
PAAF1Q9BRP4 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
PAAF1Q9BRP4 DDT-206ENST00000430101 573 ntTSL 2 BASIC19.49■□□□□ 0.71
PAAF1Q9BRP4 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
PAAF1Q9BRP4 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC19.49■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms