Protein–RNA interactions for Protein: Q9BRG1

VPS25, Vacuolar protein-sorting-associated protein 25, humanhuman

Predictions only

Length 176 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25Q9BRG1 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
VPS25Q9BRG1 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
VPS25Q9BRG1 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
VPS25Q9BRG1 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
VPS25Q9BRG1 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
VPS25Q9BRG1 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
VPS25Q9BRG1 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
VPS25Q9BRG1 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
VPS25Q9BRG1 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
VPS25Q9BRG1 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
VPS25Q9BRG1 PCDHA14-201ENST00000506751 2298 ntBASIC12.81□□□□□ -0.36
VPS25Q9BRG1 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
VPS25Q9BRG1 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
VPS25Q9BRG1 GSN-206ENST00000394353 2311 ntTSL 2 BASIC12.8□□□□□ -0.36
VPS25Q9BRG1 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC12.8□□□□□ -0.36
VPS25Q9BRG1 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
VPS25Q9BRG1 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
VPS25Q9BRG1 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
VPS25Q9BRG1 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
VPS25Q9BRG1 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
VPS25Q9BRG1 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
VPS25Q9BRG1 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
VPS25Q9BRG1 NCOR2-202ENST00000404121 7175 ntTSL 5 BASIC12.8□□□□□ -0.36
VPS25Q9BRG1 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
VPS25Q9BRG1 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC12.8□□□□□ -0.36
VPS25Q9BRG1 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC12.8□□□□□ -0.36
VPS25Q9BRG1 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC12.8□□□□□ -0.36
VPS25Q9BRG1 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
VPS25Q9BRG1 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
VPS25Q9BRG1 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC12.8□□□□□ -0.36
VPS25Q9BRG1 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
VPS25Q9BRG1 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC12.8□□□□□ -0.36
VPS25Q9BRG1 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC12.8□□□□□ -0.36
VPS25Q9BRG1 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
VPS25Q9BRG1 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
VPS25Q9BRG1 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
VPS25Q9BRG1 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
VPS25Q9BRG1 AC024909.3-201ENST00000611513 2257 ntBASIC12.8□□□□□ -0.36
VPS25Q9BRG1 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
VPS25Q9BRG1 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC12.8□□□□□ -0.36
VPS25Q9BRG1 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC12.8□□□□□ -0.36
VPS25Q9BRG1 HES4-202ENST00000428771 1040 ntTSL 2 BASIC12.8□□□□□ -0.36
VPS25Q9BRG1 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
VPS25Q9BRG1 HNRNPUL1-204ENST00000392006 3555 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
VPS25Q9BRG1 THSD4-201ENST00000261862 3133 ntTSL 5 BASIC12.8□□□□□ -0.36
VPS25Q9BRG1 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
VPS25Q9BRG1 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
VPS25Q9BRG1 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
VPS25Q9BRG1 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
VPS25Q9BRG1 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
VPS25Q9BRG1 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC12.8□□□□□ -0.36
VPS25Q9BRG1 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
VPS25Q9BRG1 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC12.8□□□□□ -0.36
VPS25Q9BRG1 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
VPS25Q9BRG1 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
VPS25Q9BRG1 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
VPS25Q9BRG1 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
VPS25Q9BRG1 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
VPS25Q9BRG1 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
VPS25Q9BRG1 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
VPS25Q9BRG1 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
VPS25Q9BRG1 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
VPS25Q9BRG1 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
VPS25Q9BRG1 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC12.79□□□□□ -0.36
VPS25Q9BRG1 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC12.79□□□□□ -0.36
VPS25Q9BRG1 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC12.79□□□□□ -0.36
VPS25Q9BRG1 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC12.79□□□□□ -0.36
VPS25Q9BRG1 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
VPS25Q9BRG1 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC12.79□□□□□ -0.36
VPS25Q9BRG1 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
VPS25Q9BRG1 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
VPS25Q9BRG1 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC12.79□□□□□ -0.36
VPS25Q9BRG1 USP19-208ENST00000453664 4719 ntAPPRIS ALT2 TSL 2 BASIC12.79□□□□□ -0.36
VPS25Q9BRG1 DUSP28-202ENST00000405954 3461 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
VPS25Q9BRG1 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC12.79□□□□□ -0.36
VPS25Q9BRG1 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
VPS25Q9BRG1 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
VPS25Q9BRG1 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
VPS25Q9BRG1 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC12.79□□□□□ -0.36
VPS25Q9BRG1 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
VPS25Q9BRG1 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
VPS25Q9BRG1 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
VPS25Q9BRG1 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC12.79□□□□□ -0.36
VPS25Q9BRG1 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC12.79□□□□□ -0.36
VPS25Q9BRG1 AC007950.2-201ENST00000615045 2347 ntBASIC12.79□□□□□ -0.36
VPS25Q9BRG1 AMER2-201ENST00000357816 10055 ntTSL 2 BASIC12.79□□□□□ -0.36
VPS25Q9BRG1 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC12.79□□□□□ -0.36
VPS25Q9BRG1 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
VPS25Q9BRG1 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
VPS25Q9BRG1 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
VPS25Q9BRG1 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC12.79□□□□□ -0.36
VPS25Q9BRG1 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
VPS25Q9BRG1 R3HDM2P2-201ENST00000401880 2116 ntBASIC12.79□□□□□ -0.36
VPS25Q9BRG1 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
VPS25Q9BRG1 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
VPS25Q9BRG1 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC12.79□□□□□ -0.36
VPS25Q9BRG1 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC12.78□□□□□ -0.36
VPS25Q9BRG1 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
VPS25Q9BRG1 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
VPS25Q9BRG1 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms