Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LRCH3Q96II8 BID-203ENST00000399765 1879 ntTSL 2 BASIC19.82■□□□□ 0.76
LRCH3Q96II8 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LRCH3Q96II8 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC19.81■□□□□ 0.76
LRCH3Q96II8 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LRCH3Q96II8 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC19.81■□□□□ 0.76
LRCH3Q96II8 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LRCH3Q96II8 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LRCH3Q96II8 CCS-201ENST00000310190 942 ntTSL 5 BASIC19.81■□□□□ 0.76
LRCH3Q96II8 COPE-202ENST00000349893 948 ntTSL 2 BASIC19.81■□□□□ 0.76
LRCH3Q96II8 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LRCH3Q96II8 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LRCH3Q96II8 AC015922.1-201ENST00000421102 1152 ntBASIC19.81■□□□□ 0.76
LRCH3Q96II8 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC19.81■□□□□ 0.76
LRCH3Q96II8 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC19.81■□□□□ 0.76
LRCH3Q96II8 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC19.81■□□□□ 0.76
LRCH3Q96II8 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LRCH3Q96II8 AC093512.1-201ENST00000617969 520 ntBASIC19.81■□□□□ 0.76
LRCH3Q96II8 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC19.81■□□□□ 0.76
LRCH3Q96II8 AP005117.1-201ENST00000584346 1413 ntBASIC19.81■□□□□ 0.76
LRCH3Q96II8 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LRCH3Q96II8 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LRCH3Q96II8 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LRCH3Q96II8 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LRCH3Q96II8 MOK-225ENST00000522867 1883 ntTSL 5 BASIC19.81■□□□□ 0.76
LRCH3Q96II8 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.81■□□□□ 0.76
LRCH3Q96II8 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.81■□□□□ 0.76
LRCH3Q96II8 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
LRCH3Q96II8 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LRCH3Q96II8 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LRCH3Q96II8 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LRCH3Q96II8 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
LRCH3Q96II8 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
LRCH3Q96II8 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC19.8■□□□□ 0.76
LRCH3Q96II8 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC19.8■□□□□ 0.76
LRCH3Q96II8 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LRCH3Q96II8 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC19.8■□□□□ 0.76
LRCH3Q96II8 HOXB1-202ENST00000577092 1414 ntBASIC19.8■□□□□ 0.76
LRCH3Q96II8 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
LRCH3Q96II8 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LRCH3Q96II8 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
LRCH3Q96II8 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC19.8■□□□□ 0.76
LRCH3Q96II8 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
LRCH3Q96II8 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LRCH3Q96II8 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC19.8■□□□□ 0.76
LRCH3Q96II8 KRT18P2-201ENST00000447938 1258 ntBASIC19.8■□□□□ 0.76
LRCH3Q96II8 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC19.8■□□□□ 0.76
LRCH3Q96II8 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
LRCH3Q96II8 DUX4L17-201ENST00000557360 1267 ntBASIC19.8■□□□□ 0.76
LRCH3Q96II8 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.8■□□□□ 0.76
LRCH3Q96II8 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
LRCH3Q96II8 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LRCH3Q96II8 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LRCH3Q96II8 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC19.8■□□□□ 0.76
LRCH3Q96II8 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
LRCH3Q96II8 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LRCH3Q96II8 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LRCH3Q96II8 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LRCH3Q96II8 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
LRCH3Q96II8 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LRCH3Q96II8 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LRCH3Q96II8 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
LRCH3Q96II8 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC19.79■□□□□ 0.76
LRCH3Q96II8 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC19.79■□□□□ 0.76
LRCH3Q96II8 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
LRCH3Q96II8 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LRCH3Q96II8 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
LRCH3Q96II8 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC19.79■□□□□ 0.76
LRCH3Q96II8 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
LRCH3Q96II8 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
LRCH3Q96II8 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC19.79■□□□□ 0.76
LRCH3Q96II8 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
LRCH3Q96II8 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC19.79■□□□□ 0.76
LRCH3Q96II8 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC19.79■□□□□ 0.76
LRCH3Q96II8 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LRCH3Q96II8 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC19.78■□□□□ 0.76
LRCH3Q96II8 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
LRCH3Q96II8 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LRCH3Q96II8 USP39-204ENST00000409766 2033 ntTSL 2 BASIC19.78■□□□□ 0.76
LRCH3Q96II8 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC19.78■□□□□ 0.76
LRCH3Q96II8 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LRCH3Q96II8 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
LRCH3Q96II8 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC19.78■□□□□ 0.76
LRCH3Q96II8 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC19.78■□□□□ 0.76
LRCH3Q96II8 CD82-202ENST00000342935 967 ntTSL 5 BASIC19.78■□□□□ 0.76
LRCH3Q96II8 METTL26-204ENST00000397665 558 ntTSL 2 BASIC19.78■□□□□ 0.76
LRCH3Q96II8 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC19.78■□□□□ 0.76
LRCH3Q96II8 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC19.78■□□□□ 0.76
LRCH3Q96II8 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC19.78■□□□□ 0.76
LRCH3Q96II8 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC19.78■□□□□ 0.76
LRCH3Q96II8 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC19.78■□□□□ 0.76
LRCH3Q96II8 INO80C-206ENST00000586489 594 ntTSL 3 BASIC19.78■□□□□ 0.76
LRCH3Q96II8 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LRCH3Q96II8 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC19.78■□□□□ 0.76
LRCH3Q96II8 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC19.77■□□□□ 0.76
LRCH3Q96II8 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
LRCH3Q96II8 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LRCH3Q96II8 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LRCH3Q96II8 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC19.77■□□□□ 0.76
LRCH3Q96II8 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC19.77■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms