Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
HPS3Q969F9 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
HPS3Q969F9 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC20.33■□□□□ 0.85
HPS3Q969F9 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HPS3Q969F9 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC20.33■□□□□ 0.85
HPS3Q969F9 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC20.33■□□□□ 0.85
HPS3Q969F9 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HPS3Q969F9 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
HPS3Q969F9 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HPS3Q969F9 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
HPS3Q969F9 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
HPS3Q969F9 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
HPS3Q969F9 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
HPS3Q969F9 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
HPS3Q969F9 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
HPS3Q969F9 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
HPS3Q969F9 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HPS3Q969F9 TERF1P1-201ENST00000311003 1181 ntBASIC20.33■□□□□ 0.85
HPS3Q969F9 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
HPS3Q969F9 GRAMD4P1-201ENST00000435181 1110 ntBASIC20.33■□□□□ 0.85
HPS3Q969F9 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC20.33■□□□□ 0.85
HPS3Q969F9 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
HPS3Q969F9 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC20.33■□□□□ 0.85
HPS3Q969F9 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HPS3Q969F9 GCSHP2-201ENST00000560971 527 ntBASIC20.33■□□□□ 0.85
HPS3Q969F9 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
HPS3Q969F9 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
HPS3Q969F9 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
HPS3Q969F9 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC20.33■□□□□ 0.84
HPS3Q969F9 GMCL1P1-201ENST00000463439 1581 ntBASIC20.33■□□□□ 0.84
HPS3Q969F9 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
HPS3Q969F9 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC20.33■□□□□ 0.84
HPS3Q969F9 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
HPS3Q969F9 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.84
HPS3Q969F9 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
HPS3Q969F9 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC20.32■□□□□ 0.84
HPS3Q969F9 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC20.32■□□□□ 0.84
HPS3Q969F9 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
HPS3Q969F9 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
HPS3Q969F9 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HPS3Q969F9 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HPS3Q969F9 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HPS3Q969F9 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HPS3Q969F9 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC20.32■□□□□ 0.84
HPS3Q969F9 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC20.32■□□□□ 0.84
HPS3Q969F9 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HPS3Q969F9 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HPS3Q969F9 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HPS3Q969F9 AC005521.1-201ENST00000393351 872 ntBASIC20.32■□□□□ 0.84
HPS3Q969F9 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HPS3Q969F9 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HPS3Q969F9 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC20.32■□□□□ 0.84
HPS3Q969F9 KRT18P57-201ENST00000443599 1254 ntBASIC20.32■□□□□ 0.84
HPS3Q969F9 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC20.32■□□□□ 0.84
HPS3Q969F9 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC20.32■□□□□ 0.84
HPS3Q969F9 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC20.32■□□□□ 0.84
HPS3Q969F9 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC20.32■□□□□ 0.84
HPS3Q969F9 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC20.32■□□□□ 0.84
HPS3Q969F9 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HPS3Q969F9 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HPS3Q969F9 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
HPS3Q969F9 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HPS3Q969F9 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
HPS3Q969F9 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HPS3Q969F9 AL096828.2-201ENST00000567259 1965 ntBASIC20.32■□□□□ 0.84
HPS3Q969F9 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HPS3Q969F9 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
HPS3Q969F9 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC20.31■□□□□ 0.84
HPS3Q969F9 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC20.31■□□□□ 0.84
HPS3Q969F9 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
HPS3Q969F9 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
HPS3Q969F9 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC20.31■□□□□ 0.84
HPS3Q969F9 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HPS3Q969F9 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
HPS3Q969F9 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC20.31■□□□□ 0.84
HPS3Q969F9 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HPS3Q969F9 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC20.31■□□□□ 0.84
HPS3Q969F9 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HPS3Q969F9 AC073508.3-201ENST00000619697 1419 ntBASIC20.31■□□□□ 0.84
HPS3Q969F9 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HPS3Q969F9 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HPS3Q969F9 AC113347.1-201ENST00000413321 391 ntBASIC20.31■□□□□ 0.84
HPS3Q969F9 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HPS3Q969F9 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC20.31■□□□□ 0.84
HPS3Q969F9 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
HPS3Q969F9 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC20.31■□□□□ 0.84
HPS3Q969F9 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC20.31■□□□□ 0.84
HPS3Q969F9 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
HPS3Q969F9 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC20.31■□□□□ 0.84
HPS3Q969F9 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HPS3Q969F9 AC005363.2-201ENST00000618631 242 ntBASIC20.31■□□□□ 0.84
HPS3Q969F9 AL157888.1-201ENST00000631930 593 ntBASIC20.31■□□□□ 0.84
HPS3Q969F9 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HPS3Q969F9 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC20.31■□□□□ 0.84
HPS3Q969F9 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HPS3Q969F9 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HPS3Q969F9 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC20.31■□□□□ 0.84
HPS3Q969F9 AC067852.2-201ENST00000590513 2313 ntBASIC20.31■□□□□ 0.84
HPS3Q969F9 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC20.31■□□□□ 0.84
HPS3Q969F9 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms