Protein–RNA interactions for Protein: Q8TD31

CCHCR1, Coiled-coil alpha-helical rod protein 1, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1Q8TD31 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCHCR1Q8TD31 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC19.15■□□□□ 0.66
CCHCR1Q8TD31 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
CCHCR1Q8TD31 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC19.15■□□□□ 0.66
CCHCR1Q8TD31 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CCHCR1Q8TD31 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCHCR1Q8TD31 RCC2P3-201ENST00000418112 1537 ntBASIC19.15■□□□□ 0.66
CCHCR1Q8TD31 MYLKP1-201ENST00000509077 1580 ntBASIC19.15■□□□□ 0.66
CCHCR1Q8TD31 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CCHCR1Q8TD31 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.66
CCHCR1Q8TD31 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC19.14■□□□□ 0.66
CCHCR1Q8TD31 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
CCHCR1Q8TD31 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
CCHCR1Q8TD31 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC19.14■□□□□ 0.66
CCHCR1Q8TD31 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.66
CCHCR1Q8TD31 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC19.14■□□□□ 0.66
CCHCR1Q8TD31 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
CCHCR1Q8TD31 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC19.14■□□□□ 0.65
CCHCR1Q8TD31 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
CCHCR1Q8TD31 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCHCR1Q8TD31 OR6D1P-202ENST00000641007 5290 ntBASIC19.14■□□□□ 0.65
CCHCR1Q8TD31 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
CCHCR1Q8TD31 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
CCHCR1Q8TD31 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
CCHCR1Q8TD31 AC008040.2-201ENST00000461049 708 ntBASIC19.14■□□□□ 0.65
CCHCR1Q8TD31 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CCHCR1Q8TD31 CYGB-204ENST00000589342 815 ntTSL 3 BASIC19.14■□□□□ 0.65
CCHCR1Q8TD31 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCHCR1Q8TD31 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CCHCR1Q8TD31 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCHCR1Q8TD31 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCHCR1Q8TD31 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCHCR1Q8TD31 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCHCR1Q8TD31 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCHCR1Q8TD31 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CCHCR1Q8TD31 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCHCR1Q8TD31 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCHCR1Q8TD31 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCHCR1Q8TD31 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCHCR1Q8TD31 AC008556.1-201ENST00000610908 2040 ntBASIC19.13■□□□□ 0.65
CCHCR1Q8TD31 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC19.13■□□□□ 0.65
CCHCR1Q8TD31 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CCHCR1Q8TD31 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CCHCR1Q8TD31 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC19.13■□□□□ 0.65
CCHCR1Q8TD31 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CCHCR1Q8TD31 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CCHCR1Q8TD31 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
CCHCR1Q8TD31 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCHCR1Q8TD31 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
CCHCR1Q8TD31 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC19.13■□□□□ 0.65
CCHCR1Q8TD31 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC19.13■□□□□ 0.65
CCHCR1Q8TD31 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CCHCR1Q8TD31 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCHCR1Q8TD31 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC19.13■□□□□ 0.65
CCHCR1Q8TD31 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC19.13■□□□□ 0.65
CCHCR1Q8TD31 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC19.13■□□□□ 0.65
CCHCR1Q8TD31 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCHCR1Q8TD31 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCHCR1Q8TD31 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC19.13■□□□□ 0.65
CCHCR1Q8TD31 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
CCHCR1Q8TD31 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC19.13■□□□□ 0.65
CCHCR1Q8TD31 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCHCR1Q8TD31 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCHCR1Q8TD31 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
CCHCR1Q8TD31 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC19.12■□□□□ 0.65
CCHCR1Q8TD31 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCHCR1Q8TD31 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCHCR1Q8TD31 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCHCR1Q8TD31 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC19.12■□□□□ 0.65
CCHCR1Q8TD31 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
CCHCR1Q8TD31 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC19.12■□□□□ 0.65
CCHCR1Q8TD31 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC19.12■□□□□ 0.65
CCHCR1Q8TD31 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCHCR1Q8TD31 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC19.12■□□□□ 0.65
CCHCR1Q8TD31 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCHCR1Q8TD31 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCHCR1Q8TD31 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCHCR1Q8TD31 SNCG-201ENST00000348795 684 ntTSL 2 BASIC19.12■□□□□ 0.65
CCHCR1Q8TD31 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCHCR1Q8TD31 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC19.12■□□□□ 0.65
CCHCR1Q8TD31 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC19.12■□□□□ 0.65
CCHCR1Q8TD31 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC19.12■□□□□ 0.65
CCHCR1Q8TD31 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
CCHCR1Q8TD31 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
CCHCR1Q8TD31 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
CCHCR1Q8TD31 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
CCHCR1Q8TD31 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCHCR1Q8TD31 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCHCR1Q8TD31 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCHCR1Q8TD31 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC19.12■□□□□ 0.65
CCHCR1Q8TD31 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC19.12■□□□□ 0.65
CCHCR1Q8TD31 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
CCHCR1Q8TD31 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CCHCR1Q8TD31 FLYWCH1P1-201ENST00000460917 1874 ntBASIC19.11■□□□□ 0.65
CCHCR1Q8TD31 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC19.11■□□□□ 0.65
CCHCR1Q8TD31 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC19.11■□□□□ 0.65
CCHCR1Q8TD31 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
CCHCR1Q8TD31 AL109659.2-201ENST00000606809 1674 ntBASIC19.11■□□□□ 0.65
CCHCR1Q8TD31 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCHCR1Q8TD31 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms