Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC18.39■□□□□ 0.53
HDDC3Q8N4P3 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC18.39■□□□□ 0.53
HDDC3Q8N4P3 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
HDDC3Q8N4P3 AL592071.1-201ENST00000611956 408 ntBASIC18.39■□□□□ 0.53
HDDC3Q8N4P3 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
HDDC3Q8N4P3 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC18.39■□□□□ 0.53
HDDC3Q8N4P3 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC18.39■□□□□ 0.53
HDDC3Q8N4P3 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HDDC3Q8N4P3 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC18.39■□□□□ 0.53
HDDC3Q8N4P3 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC18.39■□□□□ 0.53
HDDC3Q8N4P3 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
HDDC3Q8N4P3 AC009102.3-201ENST00000623118 1491 ntBASIC18.39■□□□□ 0.53
HDDC3Q8N4P3 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HDDC3Q8N4P3 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HDDC3Q8N4P3 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
HDDC3Q8N4P3 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HDDC3Q8N4P3 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HDDC3Q8N4P3 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
HDDC3Q8N4P3 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HDDC3Q8N4P3 AC138932.1-201ENST00000534164 6830 ntBASIC18.38■□□□□ 0.53
HDDC3Q8N4P3 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
HDDC3Q8N4P3 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
HDDC3Q8N4P3 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.38■□□□□ 0.53
HDDC3Q8N4P3 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HDDC3Q8N4P3 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HDDC3Q8N4P3 HES2-202ENST00000377836 507 ntTSL 2 BASIC18.38■□□□□ 0.53
HDDC3Q8N4P3 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HDDC3Q8N4P3 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
HDDC3Q8N4P3 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
HDDC3Q8N4P3 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC18.38■□□□□ 0.53
HDDC3Q8N4P3 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HDDC3Q8N4P3 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC18.38■□□□□ 0.53
HDDC3Q8N4P3 BMF-207ENST00000559701 630 ntTSL 3 BASIC18.38■□□□□ 0.53
HDDC3Q8N4P3 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC18.38■□□□□ 0.53
HDDC3Q8N4P3 AC074051.2-201ENST00000565115 352 ntBASIC18.38■□□□□ 0.53
HDDC3Q8N4P3 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC18.38■□□□□ 0.53
HDDC3Q8N4P3 CALM3-211ENST00000598871 561 ntTSL 4 BASIC18.38■□□□□ 0.53
HDDC3Q8N4P3 AC138894.3-201ENST00000603787 634 ntBASIC18.38■□□□□ 0.53
HDDC3Q8N4P3 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC18.38■□□□□ 0.53
HDDC3Q8N4P3 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC18.38■□□□□ 0.53
HDDC3Q8N4P3 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
HDDC3Q8N4P3 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC18.38■□□□□ 0.53
HDDC3Q8N4P3 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HDDC3Q8N4P3 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
HDDC3Q8N4P3 AC112777.1-201ENST00000540175 1423 ntBASIC18.38■□□□□ 0.53
HDDC3Q8N4P3 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
HDDC3Q8N4P3 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC18.38■□□□□ 0.53
HDDC3Q8N4P3 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HDDC3Q8N4P3 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HDDC3Q8N4P3 UROS-202ENST00000368778 1556 ntTSL 2 BASIC18.38■□□□□ 0.53
HDDC3Q8N4P3 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HDDC3Q8N4P3 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HDDC3Q8N4P3 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC18.37■□□□□ 0.53
HDDC3Q8N4P3 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC18.37■□□□□ 0.53
HDDC3Q8N4P3 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC18.37■□□□□ 0.53
HDDC3Q8N4P3 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC18.37■□□□□ 0.53
HDDC3Q8N4P3 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
HDDC3Q8N4P3 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
HDDC3Q8N4P3 COBL-210ENST00000632460 1941 ntTSL 5 BASIC18.37■□□□□ 0.53
HDDC3Q8N4P3 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HDDC3Q8N4P3 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
HDDC3Q8N4P3 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HDDC3Q8N4P3 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HDDC3Q8N4P3 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HDDC3Q8N4P3 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HDDC3Q8N4P3 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
HDDC3Q8N4P3 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC18.37■□□□□ 0.53
HDDC3Q8N4P3 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC18.37■□□□□ 0.53
HDDC3Q8N4P3 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC18.37■□□□□ 0.53
HDDC3Q8N4P3 SLC25A6P4-201ENST00000586535 553 ntBASIC18.37■□□□□ 0.53
HDDC3Q8N4P3 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC18.37■□□□□ 0.53
HDDC3Q8N4P3 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC18.37■□□□□ 0.53
HDDC3Q8N4P3 AL121912.1-201ENST00000603683 238 ntBASIC18.37■□□□□ 0.53
HDDC3Q8N4P3 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
HDDC3Q8N4P3 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC18.37■□□□□ 0.53
HDDC3Q8N4P3 AC117500.6-201ENST00000624871 588 ntBASIC18.37■□□□□ 0.53
HDDC3Q8N4P3 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
HDDC3Q8N4P3 AC233702.3-201ENST00000578656 1387 ntBASIC18.37■□□□□ 0.53
HDDC3Q8N4P3 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC18.37■□□□□ 0.53
HDDC3Q8N4P3 LINC00167-201ENST00000530583 1419 ntBASIC18.37■□□□□ 0.53
HDDC3Q8N4P3 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
HDDC3Q8N4P3 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
HDDC3Q8N4P3 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HDDC3Q8N4P3 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC18.37■□□□□ 0.53
HDDC3Q8N4P3 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
HDDC3Q8N4P3 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
HDDC3Q8N4P3 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HDDC3Q8N4P3 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HDDC3Q8N4P3 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HDDC3Q8N4P3 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HDDC3Q8N4P3 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
HDDC3Q8N4P3 DFFB-203ENST00000341385 572 ntTSL 5 BASIC18.36■□□□□ 0.53
HDDC3Q8N4P3 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
HDDC3Q8N4P3 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HDDC3Q8N4P3 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC18.36■□□□□ 0.53
HDDC3Q8N4P3 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HDDC3Q8N4P3 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
HDDC3Q8N4P3 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HDDC3Q8N4P3 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC18.36■□□□□ 0.53
HDDC3Q8N4P3 RN7SL606P-201ENST00000472779 293 ntBASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms