Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
KRT40Q6A162 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
KRT40Q6A162 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
KRT40Q6A162 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
KRT40Q6A162 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC21.25■□□□□ 0.99
KRT40Q6A162 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC21.25■□□□□ 0.99
KRT40Q6A162 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
KRT40Q6A162 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
KRT40Q6A162 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
KRT40Q6A162 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
KRT40Q6A162 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
KRT40Q6A162 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
KRT40Q6A162 SNCG-201ENST00000348795 684 ntTSL 2 BASIC21.25■□□□□ 0.99
KRT40Q6A162 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
KRT40Q6A162 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
KRT40Q6A162 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
KRT40Q6A162 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
KRT40Q6A162 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC21.25■□□□□ 0.99
KRT40Q6A162 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC21.25■□□□□ 0.99
KRT40Q6A162 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC21.25■□□□□ 0.99
KRT40Q6A162 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC21.25■□□□□ 0.99
KRT40Q6A162 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC21.25■□□□□ 0.99
KRT40Q6A162 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC21.25■□□□□ 0.99
KRT40Q6A162 PXK-206ENST00000463280 2825 ntTSL 2 BASIC21.25■□□□□ 0.99
KRT40Q6A162 CD276-201ENST00000318424 2738 ntTSL 5 BASIC21.25■□□□□ 0.99
KRT40Q6A162 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
KRT40Q6A162 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
KRT40Q6A162 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC21.25■□□□□ 0.99
KRT40Q6A162 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC21.25■□□□□ 0.99
KRT40Q6A162 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
KRT40Q6A162 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
KRT40Q6A162 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
KRT40Q6A162 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
KRT40Q6A162 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
KRT40Q6A162 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
KRT40Q6A162 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
KRT40Q6A162 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC21.24■□□□□ 0.99
KRT40Q6A162 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
KRT40Q6A162 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
KRT40Q6A162 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC21.24■□□□□ 0.99
KRT40Q6A162 COPS8-203ENST00000409334 794 ntTSL 5 BASIC21.24■□□□□ 0.99
KRT40Q6A162 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
KRT40Q6A162 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
KRT40Q6A162 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
KRT40Q6A162 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC21.24■□□□□ 0.99
KRT40Q6A162 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC21.24■□□□□ 0.99
KRT40Q6A162 ETFA-216ENST00000560726 942 ntTSL 3 BASIC21.24■□□□□ 0.99
KRT40Q6A162 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC21.24■□□□□ 0.99
KRT40Q6A162 AC139887.4-201ENST00000607877 719 ntBASIC21.24■□□□□ 0.99
KRT40Q6A162 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC21.24■□□□□ 0.99
KRT40Q6A162 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC21.24■□□□□ 0.99
KRT40Q6A162 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC21.24■□□□□ 0.99
KRT40Q6A162 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC21.24■□□□□ 0.99
KRT40Q6A162 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC21.24■□□□□ 0.99
KRT40Q6A162 AC009102.3-201ENST00000623118 1491 ntBASIC21.24■□□□□ 0.99
KRT40Q6A162 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
KRT40Q6A162 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC21.24■□□□□ 0.99
KRT40Q6A162 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC21.24■□□□□ 0.99
KRT40Q6A162 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
KRT40Q6A162 NOC2LP1-202ENST00000452600 2235 ntBASIC21.24■□□□□ 0.99
KRT40Q6A162 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC21.24■□□□□ 0.99
KRT40Q6A162 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC21.24■□□□□ 0.99
KRT40Q6A162 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
KRT40Q6A162 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
KRT40Q6A162 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC21.24■□□□□ 0.99
KRT40Q6A162 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
KRT40Q6A162 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
KRT40Q6A162 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
KRT40Q6A162 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
KRT40Q6A162 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
KRT40Q6A162 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
KRT40Q6A162 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
KRT40Q6A162 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
KRT40Q6A162 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC21.23■□□□□ 0.99
KRT40Q6A162 Telomerase-vert.1-201ENST00000363312 438 ntBASIC21.23■□□□□ 0.99
KRT40Q6A162 MIR149-201ENST00000384879 89 ntBASIC21.23■□□□□ 0.99
KRT40Q6A162 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC21.23■□□□□ 0.99
KRT40Q6A162 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC21.23■□□□□ 0.99
KRT40Q6A162 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
KRT40Q6A162 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC21.23■□□□□ 0.99
KRT40Q6A162 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
KRT40Q6A162 VPS72-207ENST00000640458 689 ntTSL 5 BASIC21.23■□□□□ 0.99
KRT40Q6A162 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
KRT40Q6A162 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC21.23■□□□□ 0.99
KRT40Q6A162 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC21.23■□□□□ 0.99
KRT40Q6A162 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
KRT40Q6A162 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
KRT40Q6A162 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
KRT40Q6A162 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
KRT40Q6A162 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC21.22■□□□□ 0.99
KRT40Q6A162 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
KRT40Q6A162 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
KRT40Q6A162 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
KRT40Q6A162 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
KRT40Q6A162 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
KRT40Q6A162 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
KRT40Q6A162 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
KRT40Q6A162 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
KRT40Q6A162 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
KRT40Q6A162 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC21.22■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms