Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
RC3H1Q5TC82 CD9-202ENST00000382515 1229 ntTSL 5 BASIC23.03■■□□□ 1.28
RC3H1Q5TC82 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
RC3H1Q5TC82 PMP22-202ENST00000395936 816 ntTSL 3 BASIC23.03■■□□□ 1.28
RC3H1Q5TC82 KIRREL3-AS3-201ENST00000404882 831 ntBASIC23.03■■□□□ 1.28
RC3H1Q5TC82 SRP19-202ENST00000445150 833 ntTSL 2 BASIC23.03■■□□□ 1.28
RC3H1Q5TC82 DNAJB3-201ENST00000446806 729 ntBASIC23.03■■□□□ 1.28
RC3H1Q5TC82 URGCP-206ENST00000446958 365 ntTSL 2 BASIC23.03■■□□□ 1.28
RC3H1Q5TC82 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC23.03■■□□□ 1.28
RC3H1Q5TC82 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
RC3H1Q5TC82 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC23.03■■□□□ 1.28
RC3H1Q5TC82 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC23.03■■□□□ 1.28
RC3H1Q5TC82 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
RC3H1Q5TC82 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC23.03■■□□□ 1.28
RC3H1Q5TC82 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC23.03■■□□□ 1.28
RC3H1Q5TC82 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
RC3H1Q5TC82 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC23.03■■□□□ 1.28
RC3H1Q5TC82 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC23.03■■□□□ 1.28
RC3H1Q5TC82 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
RC3H1Q5TC82 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC23.02■■□□□ 1.28
RC3H1Q5TC82 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC23.02■■□□□ 1.28
RC3H1Q5TC82 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC23.02■■□□□ 1.28
RC3H1Q5TC82 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
RC3H1Q5TC82 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
RC3H1Q5TC82 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
RC3H1Q5TC82 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC23.02■■□□□ 1.28
RC3H1Q5TC82 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
RC3H1Q5TC82 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
RC3H1Q5TC82 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
RC3H1Q5TC82 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC23.02■■□□□ 1.28
RC3H1Q5TC82 CENPM-204ENST00000402420 688 ntTSL 5 BASIC23.02■■□□□ 1.28
RC3H1Q5TC82 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC23.02■■□□□ 1.28
RC3H1Q5TC82 AC004832.2-201ENST00000426397 482 ntBASIC23.02■■□□□ 1.28
RC3H1Q5TC82 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC23.02■■□□□ 1.28
RC3H1Q5TC82 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
RC3H1Q5TC82 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC23.02■■□□□ 1.28
RC3H1Q5TC82 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC23.02■■□□□ 1.28
RC3H1Q5TC82 AL139424.1-201ENST00000607572 797 ntBASIC23.02■■□□□ 1.28
RC3H1Q5TC82 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.28
RC3H1Q5TC82 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
RC3H1Q5TC82 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.28
RC3H1Q5TC82 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC23.02■■□□□ 1.27
RC3H1Q5TC82 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.27
RC3H1Q5TC82 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC23.01■■□□□ 1.27
RC3H1Q5TC82 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC23.01■■□□□ 1.27
RC3H1Q5TC82 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
RC3H1Q5TC82 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC23.01■■□□□ 1.27
RC3H1Q5TC82 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC23.01■■□□□ 1.27
RC3H1Q5TC82 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
RC3H1Q5TC82 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
RC3H1Q5TC82 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
RC3H1Q5TC82 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC23.01■■□□□ 1.27
RC3H1Q5TC82 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
RC3H1Q5TC82 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC23.01■■□□□ 1.27
RC3H1Q5TC82 DHDH-204ENST00000523250 634 ntTSL 5 BASIC23.01■■□□□ 1.27
RC3H1Q5TC82 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC23.01■■□□□ 1.27
RC3H1Q5TC82 MIR3687-2-201ENST00000577708 61 ntBASIC23.01■■□□□ 1.27
RC3H1Q5TC82 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC23.01■■□□□ 1.27
RC3H1Q5TC82 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC23.01■■□□□ 1.27
RC3H1Q5TC82 MIR3687-1-201ENST00000614492 61 ntBASIC23.01■■□□□ 1.27
RC3H1Q5TC82 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
RC3H1Q5TC82 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
RC3H1Q5TC82 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
RC3H1Q5TC82 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC23.01■■□□□ 1.27
RC3H1Q5TC82 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC23.01■■□□□ 1.27
RC3H1Q5TC82 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC23.01■■□□□ 1.27
RC3H1Q5TC82 SNAI3-AS1-205ENST00000568633 2096 ntBASIC23.01■■□□□ 1.27
RC3H1Q5TC82 LINC01126-201ENST00000623515 1646 ntBASIC23■■□□□ 1.27
RC3H1Q5TC82 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
RC3H1Q5TC82 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC23■■□□□ 1.27
RC3H1Q5TC82 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC23■■□□□ 1.27
RC3H1Q5TC82 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC23■■□□□ 1.27
RC3H1Q5TC82 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC23■■□□□ 1.27
RC3H1Q5TC82 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
RC3H1Q5TC82 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC23■■□□□ 1.27
RC3H1Q5TC82 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
RC3H1Q5TC82 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC23■■□□□ 1.27
RC3H1Q5TC82 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC23■■□□□ 1.27
RC3H1Q5TC82 AC112698.1-201ENST00000510299 916 ntBASIC23■■□□□ 1.27
RC3H1Q5TC82 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC23■■□□□ 1.27
RC3H1Q5TC82 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC23■■□□□ 1.27
RC3H1Q5TC82 AL355385.1-201ENST00000606123 409 ntBASIC23■■□□□ 1.27
RC3H1Q5TC82 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC23■■□□□ 1.27
RC3H1Q5TC82 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC23■■□□□ 1.27
RC3H1Q5TC82 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC23■■□□□ 1.27
RC3H1Q5TC82 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC23■■□□□ 1.27
RC3H1Q5TC82 ME2-218ENST00000640965 2476 ntTSL 5 BASIC23■■□□□ 1.27
RC3H1Q5TC82 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC23■■□□□ 1.27
RC3H1Q5TC82 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
RC3H1Q5TC82 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
RC3H1Q5TC82 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC22.99■■□□□ 1.27
RC3H1Q5TC82 AP002414.3-201ENST00000589352 1468 ntBASIC22.99■■□□□ 1.27
RC3H1Q5TC82 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC22.99■■□□□ 1.27
RC3H1Q5TC82 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC22.99■■□□□ 1.27
RC3H1Q5TC82 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
RC3H1Q5TC82 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
RC3H1Q5TC82 LAGE3P1-201ENST00000425356 484 ntBASIC22.99■■□□□ 1.27
RC3H1Q5TC82 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC22.99■■□□□ 1.27
RC3H1Q5TC82 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC22.99■■□□□ 1.27
RC3H1Q5TC82 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC22.99■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms