Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
RAE1P78406 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RAE1P78406 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC17.41■□□□□ 0.38
RAE1P78406 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
RAE1P78406 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
RAE1P78406 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
RAE1P78406 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
RAE1P78406 AP000997.3-201ENST00000623333 2250 ntBASIC17.41■□□□□ 0.38
RAE1P78406 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RAE1P78406 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RAE1P78406 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
RAE1P78406 AC093010.1-201ENST00000473625 1624 ntBASIC17.41■□□□□ 0.38
RAE1P78406 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RAE1P78406 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RAE1P78406 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
RAE1P78406 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RAE1P78406 Telomerase-vert.1-201ENST00000363312 438 ntBASIC17.41■□□□□ 0.38
RAE1P78406 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
RAE1P78406 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC17.41■□□□□ 0.38
RAE1P78406 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC17.41■□□□□ 0.38
RAE1P78406 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC17.41■□□□□ 0.38
RAE1P78406 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
RAE1P78406 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC17.41■□□□□ 0.38
RAE1P78406 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
RAE1P78406 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RAE1P78406 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RAE1P78406 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.41■□□□□ 0.38
RAE1P78406 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
RAE1P78406 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RAE1P78406 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
RAE1P78406 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
RAE1P78406 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
RAE1P78406 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
RAE1P78406 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
RAE1P78406 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RAE1P78406 STK4-201ENST00000372801 2038 ntTSL 2 BASIC17.4■□□□□ 0.38
RAE1P78406 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RAE1P78406 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC17.4■□□□□ 0.38
RAE1P78406 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC17.4■□□□□ 0.38
RAE1P78406 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC17.4■□□□□ 0.38
RAE1P78406 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC17.4■□□□□ 0.38
RAE1P78406 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
RAE1P78406 SLC25A6P5-201ENST00000435663 894 ntBASIC17.4■□□□□ 0.38
RAE1P78406 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC17.4■□□□□ 0.38
RAE1P78406 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC17.4■□□□□ 0.38
RAE1P78406 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC17.4■□□□□ 0.38
RAE1P78406 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC17.4■□□□□ 0.38
RAE1P78406 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC17.4■□□□□ 0.38
RAE1P78406 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
RAE1P78406 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RAE1P78406 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RAE1P78406 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
RAE1P78406 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
RAE1P78406 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
RAE1P78406 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
RAE1P78406 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
RAE1P78406 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
RAE1P78406 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
RAE1P78406 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC17.39■□□□□ 0.38
RAE1P78406 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC17.39■□□□□ 0.37
RAE1P78406 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
RAE1P78406 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
RAE1P78406 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
RAE1P78406 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
RAE1P78406 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RAE1P78406 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.39■□□□□ 0.37
RAE1P78406 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
RAE1P78406 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RAE1P78406 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RAE1P78406 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RAE1P78406 AC087499.1-201ENST00000418141 1075 ntBASIC17.39■□□□□ 0.37
RAE1P78406 TMA16-209ENST00000513272 803 ntTSL 2 BASIC17.39■□□□□ 0.37
RAE1P78406 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC17.39■□□□□ 0.37
RAE1P78406 AC009065.1-201ENST00000564055 1225 ntBASIC17.39■□□□□ 0.37
RAE1P78406 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC17.39■□□□□ 0.37
RAE1P78406 NEK4P2-201ENST00000580004 1012 ntBASIC17.39■□□□□ 0.37
RAE1P78406 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC17.39■□□□□ 0.37
RAE1P78406 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
RAE1P78406 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
RAE1P78406 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RAE1P78406 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RAE1P78406 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.39■□□□□ 0.37
RAE1P78406 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RAE1P78406 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RAE1P78406 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
RAE1P78406 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RAE1P78406 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC17.39■□□□□ 0.37
RAE1P78406 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
RAE1P78406 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
RAE1P78406 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC17.39■□□□□ 0.37
RAE1P78406 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
RAE1P78406 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RAE1P78406 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC17.38■□□□□ 0.37
RAE1P78406 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC17.38■□□□□ 0.37
RAE1P78406 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
RAE1P78406 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC17.38■□□□□ 0.37
RAE1P78406 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RAE1P78406 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
RAE1P78406 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.38■□□□□ 0.37
RAE1P78406 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 76.3 ms