Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 AC091607.1-201ENST00000490318 1060 ntBASIC18.11■□□□□ 0.49
LIMK1P53667 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC18.11■□□□□ 0.49
LIMK1P53667 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC18.11■□□□□ 0.49
LIMK1P53667 BNIP3P18-201ENST00000593976 575 ntBASIC18.11■□□□□ 0.49
LIMK1P53667 AC116407.3-201ENST00000623905 1129 ntBASIC18.11■□□□□ 0.49
LIMK1P53667 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LIMK1P53667 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LIMK1P53667 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LIMK1P53667 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC18.11■□□□□ 0.49
LIMK1P53667 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIMK1P53667 TREX1-205ENST00000625293 1783 ntBASIC18.11■□□□□ 0.49
LIMK1P53667 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
LIMK1P53667 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
LIMK1P53667 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LIMK1P53667 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIMK1P53667 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIMK1P53667 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LIMK1P53667 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIMK1P53667 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
LIMK1P53667 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIMK1P53667 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIMK1P53667 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
LIMK1P53667 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIMK1P53667 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LIMK1P53667 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC18.1■□□□□ 0.49
LIMK1P53667 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIMK1P53667 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIMK1P53667 PBK-203ENST00000522944 1499 ntTSL 2 BASIC18.1■□□□□ 0.49
LIMK1P53667 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LIMK1P53667 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC18.1■□□□□ 0.49
LIMK1P53667 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIMK1P53667 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC18.1■□□□□ 0.49
LIMK1P53667 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC18.1■□□□□ 0.49
LIMK1P53667 AC024563.2-201ENST00000603282 481 ntBASIC18.1■□□□□ 0.49
LIMK1P53667 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC18.1■□□□□ 0.49
LIMK1P53667 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LIMK1P53667 AC114341.1-201ENST00000618070 349 ntBASIC18.1■□□□□ 0.49
LIMK1P53667 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC18.1■□□□□ 0.49
LIMK1P53667 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
LIMK1P53667 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LIMK1P53667 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC18.1■□□□□ 0.49
LIMK1P53667 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIMK1P53667 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC18.1■□□□□ 0.49
LIMK1P53667 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIMK1P53667 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIMK1P53667 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LIMK1P53667 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIMK1P53667 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LIMK1P53667 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LIMK1P53667 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMK1P53667 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMK1P53667 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18.09■□□□□ 0.49
LIMK1P53667 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMK1P53667 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC18.09■□□□□ 0.49
LIMK1P53667 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMK1P53667 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMK1P53667 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMK1P53667 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMK1P53667 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LIMK1P53667 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC18.09■□□□□ 0.49
LIMK1P53667 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMK1P53667 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC18.09■□□□□ 0.49
LIMK1P53667 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18.09■□□□□ 0.49
LIMK1P53667 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMK1P53667 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC18.09■□□□□ 0.49
LIMK1P53667 DNAJB3-201ENST00000446806 729 ntBASIC18.09■□□□□ 0.49
LIMK1P53667 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
LIMK1P53667 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC18.09■□□□□ 0.49
LIMK1P53667 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LIMK1P53667 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC18.09■□□□□ 0.49
LIMK1P53667 CD63-204ENST00000546939 779 ntTSL 3 BASIC18.09■□□□□ 0.49
LIMK1P53667 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC18.09■□□□□ 0.49
LIMK1P53667 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC18.09■□□□□ 0.49
LIMK1P53667 AL355877.3-201ENST00000622820 899 ntBASIC18.09■□□□□ 0.49
LIMK1P53667 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMK1P53667 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LIMK1P53667 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMK1P53667 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMK1P53667 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LIMK1P53667 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMK1P53667 AL109659.2-201ENST00000606809 1674 ntBASIC18.09■□□□□ 0.49
LIMK1P53667 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LIMK1P53667 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC18.08■□□□□ 0.49
LIMK1P53667 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
LIMK1P53667 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
LIMK1P53667 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
LIMK1P53667 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC18.08■□□□□ 0.49
LIMK1P53667 KRT89P-201ENST00000620027 1478 ntBASIC18.08■□□□□ 0.49
LIMK1P53667 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
LIMK1P53667 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
LIMK1P53667 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.08■□□□□ 0.49
LIMK1P53667 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
LIMK1P53667 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
LIMK1P53667 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
LIMK1P53667 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
LIMK1P53667 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
LIMK1P53667 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
LIMK1P53667 IMP4-203ENST00000409935 958 ntTSL 5 BASIC18.08■□□□□ 0.48
LIMK1P53667 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC18.08■□□□□ 0.48
LIMK1P53667 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 71.6 ms