Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC30.63■■■□□ 2.49
CUX1P39880 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC30.63■■■□□ 2.49
CUX1P39880 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
CUX1P39880 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC30.63■■■□□ 2.49
CUX1P39880 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC30.63■■■□□ 2.49
CUX1P39880 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC30.63■■■□□ 2.49
CUX1P39880 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC30.63■■■□□ 2.49
CUX1P39880 LINC00602-201ENST00000629776 2065 ntBASIC30.62■■■□□ 2.49
CUX1P39880 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
CUX1P39880 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
CUX1P39880 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC30.62■■■□□ 2.49
CUX1P39880 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC30.62■■■□□ 2.49
CUX1P39880 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
CUX1P39880 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC30.62■■■□□ 2.49
CUX1P39880 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
CUX1P39880 BID-204ENST00000399767 2129 ntTSL 2 BASIC30.62■■■□□ 2.49
CUX1P39880 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC30.62■■■□□ 2.49
CUX1P39880 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC30.62■■■□□ 2.49
CUX1P39880 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC30.62■■■□□ 2.49
CUX1P39880 AC009947.1-201ENST00000444350 727 ntBASIC30.62■■■□□ 2.49
CUX1P39880 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC30.62■■■□□ 2.49
CUX1P39880 DHDH-204ENST00000523250 634 ntTSL 5 BASIC30.62■■■□□ 2.49
CUX1P39880 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC30.62■■■□□ 2.49
CUX1P39880 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC30.62■■■□□ 2.49
CUX1P39880 NKAPP1-205ENST00000585790 367 ntBASIC30.62■■■□□ 2.49
CUX1P39880 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC30.62■■■□□ 2.49
CUX1P39880 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
CUX1P39880 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
CUX1P39880 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
CUX1P39880 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
CUX1P39880 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
CUX1P39880 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC30.61■■■□□ 2.49
CUX1P39880 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC30.61■■■□□ 2.49
CUX1P39880 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC30.61■■■□□ 2.49
CUX1P39880 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
CUX1P39880 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
CUX1P39880 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC30.61■■■□□ 2.49
CUX1P39880 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC30.61■■■□□ 2.49
CUX1P39880 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC30.61■■■□□ 2.49
CUX1P39880 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC30.61■■■□□ 2.49
CUX1P39880 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC30.61■■■□□ 2.49
CUX1P39880 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC30.61■■■□□ 2.49
CUX1P39880 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC30.61■■■□□ 2.49
CUX1P39880 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC30.61■■■□□ 2.49
CUX1P39880 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
CUX1P39880 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
CUX1P39880 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC30.6■■■□□ 2.49
CUX1P39880 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC30.6■■■□□ 2.49
CUX1P39880 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
CUX1P39880 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
CUX1P39880 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
CUX1P39880 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
CUX1P39880 LAGE3P1-201ENST00000425356 484 ntBASIC30.6■■■□□ 2.49
CUX1P39880 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC30.6■■■□□ 2.49
CUX1P39880 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC30.6■■■□□ 2.49
CUX1P39880 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
CUX1P39880 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC30.6■■■□□ 2.49
CUX1P39880 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC30.6■■■□□ 2.49
CUX1P39880 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC30.6■■■□□ 2.49
CUX1P39880 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
CUX1P39880 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC30.59■■■□□ 2.49
CUX1P39880 AL499627.1-201ENST00000569373 2188 ntBASIC30.59■■■□□ 2.49
CUX1P39880 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
CUX1P39880 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC30.59■■■□□ 2.49
CUX1P39880 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC30.59■■■□□ 2.49
CUX1P39880 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
CUX1P39880 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC30.59■■■□□ 2.49
CUX1P39880 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC30.59■■■□□ 2.49
CUX1P39880 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
CUX1P39880 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
CUX1P39880 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
CUX1P39880 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC30.59■■■□□ 2.49
CUX1P39880 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
CUX1P39880 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC30.58■■■□□ 2.49
CUX1P39880 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC30.58■■■□□ 2.49
CUX1P39880 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC30.58■■■□□ 2.49
CUX1P39880 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC30.58■■■□□ 2.49
CUX1P39880 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC30.58■■■□□ 2.49
CUX1P39880 AC105339.3-201ENST00000560043 636 ntBASIC30.58■■■□□ 2.49
CUX1P39880 AC027796.2-201ENST00000575326 344 ntBASIC30.58■■■□□ 2.49
CUX1P39880 AP000867.4-201ENST00000641616 219 ntBASIC30.58■■■□□ 2.49
CUX1P39880 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC30.58■■■□□ 2.49
CUX1P39880 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC30.58■■■□□ 2.49
CUX1P39880 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC30.58■■■□□ 2.49
CUX1P39880 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC30.58■■■□□ 2.49
CUX1P39880 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
CUX1P39880 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC30.57■■■□□ 2.49
CUX1P39880 CRCP-205ENST00000431089 942 ntTSL 2 BASIC30.57■■■□□ 2.49
CUX1P39880 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC30.57■■■□□ 2.49
CUX1P39880 AC112698.1-201ENST00000510299 916 ntBASIC30.57■■■□□ 2.49
CUX1P39880 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
CUX1P39880 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
CUX1P39880 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
CUX1P39880 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC30.57■■■□□ 2.48
CUX1P39880 AC093484.2-201ENST00000580996 2166 ntBASIC30.57■■■□□ 2.48
CUX1P39880 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
CUX1P39880 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
CUX1P39880 PMP22-202ENST00000395936 816 ntTSL 3 BASIC30.57■■■□□ 2.48
CUX1P39880 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC30.57■■■□□ 2.48
CUX1P39880 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC30.57■■■□□ 2.48
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms