Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHMT2P34897 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
SHMT2P34897 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHMT2P34897 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHMT2P34897 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC17.99■□□□□ 0.47
SHMT2P34897 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHMT2P34897 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHMT2P34897 SNAI3-AS1-205ENST00000568633 2096 ntBASIC17.99■□□□□ 0.47
SHMT2P34897 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
SHMT2P34897 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SHMT2P34897 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC17.98■□□□□ 0.47
SHMT2P34897 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
SHMT2P34897 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
SHMT2P34897 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SHMT2P34897 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
SHMT2P34897 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC17.98■□□□□ 0.47
SHMT2P34897 NOC2LP2-201ENST00000407594 1944 ntBASIC17.98■□□□□ 0.47
SHMT2P34897 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SHMT2P34897 STARP1-201ENST00000397973 869 ntBASIC17.98■□□□□ 0.47
SHMT2P34897 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
SHMT2P34897 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC17.98■□□□□ 0.47
SHMT2P34897 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SHMT2P34897 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC17.98■□□□□ 0.47
SHMT2P34897 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC17.98■□□□□ 0.47
SHMT2P34897 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
SHMT2P34897 AC093525.10-201ENST00000625130 1569 ntBASIC17.98■□□□□ 0.47
SHMT2P34897 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SHMT2P34897 AL354751.1-201ENST00000412768 1863 ntBASIC17.98■□□□□ 0.47
SHMT2P34897 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SHMT2P34897 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SHMT2P34897 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SHMT2P34897 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
SHMT2P34897 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
SHMT2P34897 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC17.98■□□□□ 0.47
SHMT2P34897 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC17.98■□□□□ 0.47
SHMT2P34897 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC17.98■□□□□ 0.47
SHMT2P34897 CYP51A1P1-201ENST00000492267 1507 ntBASIC17.98■□□□□ 0.47
SHMT2P34897 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
SHMT2P34897 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SHMT2P34897 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SHMT2P34897 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SHMT2P34897 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SHMT2P34897 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SHMT2P34897 BICD1-207ENST00000551848 1962 ntBASIC17.97■□□□□ 0.47
SHMT2P34897 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC17.97■□□□□ 0.47
SHMT2P34897 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SHMT2P34897 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC17.97■□□□□ 0.47
SHMT2P34897 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SHMT2P34897 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SHMT2P34897 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC17.97■□□□□ 0.47
SHMT2P34897 AL359075.1-203ENST00000462729 1002 ntBASIC17.97■□□□□ 0.47
SHMT2P34897 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC17.97■□□□□ 0.47
SHMT2P34897 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC17.97■□□□□ 0.47
SHMT2P34897 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC17.97■□□□□ 0.47
SHMT2P34897 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC17.97■□□□□ 0.47
SHMT2P34897 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC17.97■□□□□ 0.47
SHMT2P34897 AC009065.1-201ENST00000564055 1225 ntBASIC17.97■□□□□ 0.47
SHMT2P34897 MIR3180-4-201ENST00000582223 153 ntBASIC17.97■□□□□ 0.47
SHMT2P34897 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC17.97■□□□□ 0.47
SHMT2P34897 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
SHMT2P34897 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC17.97■□□□□ 0.47
SHMT2P34897 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SHMT2P34897 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SHMT2P34897 AC068880.1-201ENST00000507289 2297 ntBASIC17.97■□□□□ 0.47
SHMT2P34897 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC17.97■□□□□ 0.47
SHMT2P34897 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
SHMT2P34897 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SHMT2P34897 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SHMT2P34897 AL031598.1-201ENST00000561511 1773 ntBASIC17.96■□□□□ 0.47
SHMT2P34897 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC17.96■□□□□ 0.47
SHMT2P34897 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SHMT2P34897 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SHMT2P34897 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC17.96■□□□□ 0.47
SHMT2P34897 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC17.96■□□□□ 0.47
SHMT2P34897 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
SHMT2P34897 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SHMT2P34897 COPE-203ENST00000351079 907 ntTSL 2 BASIC17.96■□□□□ 0.47
SHMT2P34897 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SHMT2P34897 SAPCD2P2-201ENST00000431719 1174 ntBASIC17.96■□□□□ 0.47
SHMT2P34897 SNX5-210ENST00000481323 562 ntTSL 3 BASIC17.96■□□□□ 0.47
SHMT2P34897 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SHMT2P34897 RMI2-205ENST00000576027 818 ntTSL 2 BASIC17.96■□□□□ 0.47
SHMT2P34897 AC010240.3-201ENST00000607688 395 ntBASIC17.96■□□□□ 0.47
SHMT2P34897 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC17.96■□□□□ 0.47
SHMT2P34897 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SHMT2P34897 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
SHMT2P34897 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SHMT2P34897 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
SHMT2P34897 AC112777.1-201ENST00000540175 1423 ntBASIC17.96■□□□□ 0.47
SHMT2P34897 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SHMT2P34897 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC17.96■□□□□ 0.47
SHMT2P34897 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
SHMT2P34897 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC17.95■□□□□ 0.46
SHMT2P34897 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC17.95■□□□□ 0.46
SHMT2P34897 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SHMT2P34897 MED25-212ENST00000618715 1467 ntTSL 5 BASIC17.95■□□□□ 0.46
SHMT2P34897 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC17.95■□□□□ 0.46
SHMT2P34897 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SHMT2P34897 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
SHMT2P34897 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms