Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC18.1■□□□□ 0.49
TRIM13O60858 AC092666.2-201ENST00000613287 246 ntBASIC18.1■□□□□ 0.49
TRIM13O60858 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM13O60858 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM13O60858 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM13O60858 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM13O60858 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM13O60858 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM13O60858 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM13O60858 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM13O60858 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM13O60858 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM13O60858 PHGDH-209ENST00000641074 1780 ntBASIC18.09■□□□□ 0.49
TRIM13O60858 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC18.09■□□□□ 0.49
TRIM13O60858 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM13O60858 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
TRIM13O60858 AC034236.2-201ENST00000606662 1610 ntBASIC18.09■□□□□ 0.49
TRIM13O60858 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC18.09■□□□□ 0.49
TRIM13O60858 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM13O60858 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM13O60858 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM13O60858 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM13O60858 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM13O60858 AL023284.2-201ENST00000405850 579 ntBASIC18.09■□□□□ 0.49
TRIM13O60858 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM13O60858 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
TRIM13O60858 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC18.09■□□□□ 0.49
TRIM13O60858 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC18.09■□□□□ 0.49
TRIM13O60858 MIR6786-201ENST00000616843 113 ntBASIC18.09■□□□□ 0.49
TRIM13O60858 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM13O60858 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM13O60858 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
TRIM13O60858 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM13O60858 TBC1D3P2-202ENST00000577902 1649 ntBASIC18.09■□□□□ 0.49
TRIM13O60858 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC18.09■□□□□ 0.49
TRIM13O60858 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM13O60858 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC18.08■□□□□ 0.49
TRIM13O60858 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
TRIM13O60858 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC18.08■□□□□ 0.49
TRIM13O60858 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
TRIM13O60858 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRIM13O60858 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.48
TRIM13O60858 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC18.08■□□□□ 0.48
TRIM13O60858 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC18.08■□□□□ 0.48
TRIM13O60858 B3GAT3P1-201ENST00000471720 806 ntBASIC18.08■□□□□ 0.48
TRIM13O60858 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
TRIM13O60858 AC073195.1-201ENST00000607241 877 ntBASIC18.08■□□□□ 0.48
TRIM13O60858 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC18.08■□□□□ 0.48
TRIM13O60858 AC073648.6-201ENST00000641589 218 ntBASIC18.08■□□□□ 0.48
TRIM13O60858 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRIM13O60858 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
TRIM13O60858 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC18.08■□□□□ 0.48
TRIM13O60858 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRIM13O60858 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
TRIM13O60858 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRIM13O60858 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
TRIM13O60858 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRIM13O60858 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM13O60858 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM13O60858 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC18.07■□□□□ 0.48
TRIM13O60858 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.07■□□□□ 0.48
TRIM13O60858 KRT8P50-201ENST00000562022 1438 ntBASIC18.07■□□□□ 0.48
TRIM13O60858 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC18.07■□□□□ 0.48
TRIM13O60858 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC18.07■□□□□ 0.48
TRIM13O60858 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM13O60858 FST-202ENST00000396947 2538 ntTSL 5 BASIC18.07■□□□□ 0.48
TRIM13O60858 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM13O60858 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM13O60858 HLA-DQB1-201ENST00000374943 1656 ntBASIC18.07■□□□□ 0.48
TRIM13O60858 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM13O60858 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM13O60858 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC18.07■□□□□ 0.48
TRIM13O60858 MCCD1P1-208ENST00000445732 328 ntBASIC18.07■□□□□ 0.48
TRIM13O60858 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM13O60858 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC18.07■□□□□ 0.48
TRIM13O60858 ADM-205ENST00000528544 586 ntTSL 2 BASIC18.07■□□□□ 0.48
TRIM13O60858 EMC9-206ENST00000560403 872 ntTSL 2 BASIC18.07■□□□□ 0.48
TRIM13O60858 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
TRIM13O60858 MNT-208ENST00000575394 606 ntTSL 4 BASIC18.07■□□□□ 0.48
TRIM13O60858 AF186192.3-201ENST00000583427 947 ntBASIC18.07■□□□□ 0.48
TRIM13O60858 AP000692.2-201ENST00000608391 879 ntBASIC18.07■□□□□ 0.48
TRIM13O60858 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM13O60858 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM13O60858 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC18.07■□□□□ 0.48
TRIM13O60858 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
TRIM13O60858 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM13O60858 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM13O60858 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
TRIM13O60858 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC18.07■□□□□ 0.48
TRIM13O60858 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
TRIM13O60858 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM13O60858 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM13O60858 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
TRIM13O60858 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM13O60858 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC18.06■□□□□ 0.48
TRIM13O60858 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
TRIM13O60858 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC18.06■□□□□ 0.48
TRIM13O60858 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC18.06■□□□□ 0.48
TRIM13O60858 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC18.06■□□□□ 0.48
TRIM13O60858 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms