Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
UBFD1O14562 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
UBFD1O14562 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC17.82■□□□□ 0.44
UBFD1O14562 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
UBFD1O14562 UBE2SP1-201ENST00000450587 669 ntBASIC17.82■□□□□ 0.44
UBFD1O14562 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC17.82■□□□□ 0.44
UBFD1O14562 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC17.82■□□□□ 0.44
UBFD1O14562 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC17.82■□□□□ 0.44
UBFD1O14562 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC17.82■□□□□ 0.44
UBFD1O14562 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
UBFD1O14562 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
UBFD1O14562 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
UBFD1O14562 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC17.82■□□□□ 0.44
UBFD1O14562 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC17.82■□□□□ 0.44
UBFD1O14562 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
UBFD1O14562 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
UBFD1O14562 AC009102.3-201ENST00000623118 1491 ntBASIC17.82■□□□□ 0.44
UBFD1O14562 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
UBFD1O14562 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
UBFD1O14562 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
UBFD1O14562 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC17.81■□□□□ 0.44
UBFD1O14562 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
UBFD1O14562 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
UBFD1O14562 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
UBFD1O14562 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
UBFD1O14562 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
UBFD1O14562 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
UBFD1O14562 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
UBFD1O14562 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
UBFD1O14562 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
UBFD1O14562 LINC01126-201ENST00000623515 1646 ntBASIC17.81■□□□□ 0.44
UBFD1O14562 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
UBFD1O14562 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
UBFD1O14562 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
UBFD1O14562 MIR149-201ENST00000384879 89 ntBASIC17.81■□□□□ 0.44
UBFD1O14562 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
UBFD1O14562 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
UBFD1O14562 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC17.81■□□□□ 0.44
UBFD1O14562 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
UBFD1O14562 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
UBFD1O14562 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
UBFD1O14562 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC17.81■□□□□ 0.44
UBFD1O14562 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC17.81■□□□□ 0.44
UBFD1O14562 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC17.81■□□□□ 0.44
UBFD1O14562 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.81■□□□□ 0.44
UBFD1O14562 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC17.81■□□□□ 0.44
UBFD1O14562 HOXB1-202ENST00000577092 1414 ntBASIC17.81■□□□□ 0.44
UBFD1O14562 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
UBFD1O14562 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
UBFD1O14562 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
UBFD1O14562 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
UBFD1O14562 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
UBFD1O14562 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC17.8■□□□□ 0.44
UBFD1O14562 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
UBFD1O14562 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
UBFD1O14562 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC17.8■□□□□ 0.44
UBFD1O14562 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
UBFD1O14562 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC17.8■□□□□ 0.44
UBFD1O14562 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC17.8■□□□□ 0.44
UBFD1O14562 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
UBFD1O14562 AP003041.3-201ENST00000527151 707 ntBASIC17.8■□□□□ 0.44
UBFD1O14562 AP005242.2-201ENST00000580065 1175 ntBASIC17.8■□□□□ 0.44
UBFD1O14562 Z99916.2-201ENST00000604037 246 ntBASIC17.8■□□□□ 0.44
UBFD1O14562 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC17.8■□□□□ 0.44
UBFD1O14562 AC026471.5-201ENST00000615068 467 ntBASIC17.8■□□□□ 0.44
UBFD1O14562 DECR2-212ENST00000627716 352 ntTSL 2 BASIC17.8■□□□□ 0.44
UBFD1O14562 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC17.8■□□□□ 0.44
UBFD1O14562 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.8■□□□□ 0.44
UBFD1O14562 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
UBFD1O14562 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
UBFD1O14562 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
UBFD1O14562 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
UBFD1O14562 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
UBFD1O14562 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
UBFD1O14562 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
UBFD1O14562 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
UBFD1O14562 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
UBFD1O14562 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
UBFD1O14562 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC17.79■□□□□ 0.44
UBFD1O14562 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC17.79■□□□□ 0.44
UBFD1O14562 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
UBFD1O14562 AC020916.1-201ENST00000587762 1774 ntBASIC17.79■□□□□ 0.44
UBFD1O14562 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
UBFD1O14562 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC17.79■□□□□ 0.44
UBFD1O14562 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC17.79■□□□□ 0.44
UBFD1O14562 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
UBFD1O14562 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
UBFD1O14562 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
UBFD1O14562 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC17.79■□□□□ 0.44
UBFD1O14562 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
UBFD1O14562 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
UBFD1O14562 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
UBFD1O14562 AL355355.2-201ENST00000442321 338 ntBASIC17.79■□□□□ 0.44
UBFD1O14562 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC17.79■□□□□ 0.44
UBFD1O14562 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC17.79■□□□□ 0.44
UBFD1O14562 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
UBFD1O14562 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC17.79■□□□□ 0.44
UBFD1O14562 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
UBFD1O14562 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
UBFD1O14562 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms